Table 2 RNA-seq alignment details and mapping ratios
Samples | Total reads (M) | Mapped reads (M) | Uniq mapped reads (M) | Multiple map reads (M) | Reads map to ‘+’ | Reads map to ‘-’ |
|---|---|---|---|---|---|---|
Non-infected rainbow trout 1 | 53.8382 | 45.6616 (84.81 %) | 42.0247 (78.06 %) | 3.6369 (6.76 %) | 22.4170 (41.64 %) | 22.6348 (42.04 %) |
Non-infected rainbow trout 2 | 46.9109 | 40.1607 (85.61 %) | 36.7008 (78.24 %) | 3.4599 (7.38 %) | 19.7468 (42.09 %) | 19.9220 (42.47 %) |
Non-infected rainbow trout 3 | 51.0477 | 43.3188 (84.86 %) | 39.8427 (78.05 %) | 3.4761 (6.81 %) | 21.3261 (41.78 %) | 21.4872 (42.09 %) |
YR-infected rainbow trout 1 | 45.1922 | 38.7941 (85.84 %) | 35.5522 (78.67 %) | 3.2418 (7.17 %) | 19.0209 (42.09 %) | 19.2198 (42.53 %) |
YR-infected rainbow trout 2 | 47.0682 | 40.4739 (85.99 %) | 37.2354 (79.11 %) | 3.2386 (6.88 %) | 19.7989 (42.06 %) | 20.0358 (42.57 %) |
YR-infected rainbow trout 3 | 51.4973 | 43.9318 (85.31 %) | 40.4383 (78.53 %) | 3.4934 (6.78 %) | 21.4897 (41.73 %) | 21.7333 (42.20 %) |
Non-infected group | 50.5989 | 129.1411 (85.09 %) | 118.5682 (78.12 %) | 10.5729 (6.98 %) | 63.4899 (41.84 %) | 64.0440 (42.20 %) |
YR-infected group | 47.9192 | 123.1998 (85.71 %) | 113.2259 (78.77 %) | 9.9738 (6.94 %) | 60.3095 (41.96 %) | 60.9889 (42.43 %) |
Total | 295.5624 | 252.3409 (85.40 %) | 231.7941 (78.44 %) | 20.5467 (6.96 %) | 123.7985 (41.90 %) | 125.0329 (42.32 %) |