Table 2 Six different input gene sets used for GWAS integration
From: Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria
Post-infection time point | Filtered differentially expressed genes (DEG) | Correlation networks analysis (CON) | Differential expression network analysis (DEN) | |||
|---|---|---|---|---|---|---|
Input gene set code | No. of genes | Input gene set code | No. of genes | Input gene set code | No. of genes | |
24 hpi | DEG-24 | 378 | CON-24 | 460 | DEN-24 | 338 |
48 hpi | DEG-48 | 390 | CON-48 | 416 | DEN-48 | 493 |