Fig. 3

Full-length CoDi long-terminal repeat retrotransposon content in the Phaeodactylum tricornutum genome [11]. LTR-RT characterization is presented for the Bowler et al. reference genome (a) and Canu assembly (b). The Relative abundance of full-length LTR-RTs assigned to each CoDi group is presented for the Bowler et al. reference genome (c) and our de novo Canu assembly (d). Characterization of the LTR-RT loci resolved per CoDi group for the reference genome (e) and Canu assembly (f). LTR-RTs are characterized as either “previously reported loci” (i.e., loci homologous to those previously reported by Maumus et al. [14] in the reference genome), “overlooked loci” (those homologous to those present in the reference genome but not reported) or “novel loci” (i.e., loci detected in our long-read assembly but without a homologous insertion in the reference genome)