Table 1 Clinical isolates metadata and number of ES proteins
Strain | Accession number | Genome ID | Origin | Phenotype | Sequence Type (ST) | Total predicted proteins | ES proteins | % ES proteins |
|---|---|---|---|---|---|---|---|---|
M. abscessus subsp. abscessus | GCA_015499845.1 | 4549-15 | sputum | rough | 1 | 5105 | 929 | 18 |
GCA_015499865.1 | 11351-15 | sputum | rough | 63 | 5138 | 966 | 19 | |
GCA_015499835.1 | 8844-15 | skin | smooth | 246 | 4854 | 956 | 20 | |
GCA_015499805.1 | 3563-15 | sputum | smooth | 33 | 5239 | 968 | 18 | |
GCA_015499795.1 | 12389-15 | sputum | smooth | 47 | 5276 | 990 | 19 | |
GCA_015499765.1 | 2677-16 | sputum | smooth | 34 | 4900 | 919 | 19 | |
GCA_015499745.1 | 2572-17 | tissue (breast implant) | NA | 10-46-64-70-261 | 4847 | 874 | 18 | |
M. abscessus subsp. massiliense | GCA_015499715.1 | 14479-15 | sputum | rough | 117 | 5120 | 962 | 19 |
GCA_015499735.1 | 10896-16 | sputum | rough | 117 | 5109 | 950 | 19 | |
GCA_015499695.1 | 10003-15 | sputum | smooth | 98-245-271 | 4835 | 891 | 18 | |
GCA_015499655.1 | 16155-15 | sputum | smooth | 98-245-271 | 4884 | 898 | 18 | |
M. abscessus subsp. bolletii | GCA_015499665.1 | 11702-16 | sputum | rough | 161 | 5079 | 931 | 18 |
GCA_015499625.1 | 713-16 | lymph node | rough | 52 | 5456 | 1037 | 19 | |
GCA_015499615.1 | 7742-15 | blood culture | smooth | 333 | 4913 | 885 | 18 | |
GCA_015499585.1 | 13116-16 | lymph node | smooth | 52 | 5305 | 990 | 19 | |
M. abscessus subsp. abscessus | CU458896.1 | reference strain ATCC19977 | – | – | 4942 | 886 | 18 | |
M. tuberculosis H37Rv | NC_000962.3 | reference strain | – | – | 4337 | 548 | 13 |