A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms

Table 1 Statistics of the de novo transcriptome assembly and mapping of clean reads against the new transcriptome assembly including novel transcripts

Sample	No. Transcripts	Mapping Ratio (%)	Uniquely Mapping Ratio (%)	No. Novel Transcripts	No. genes	No. novel Genes
Shoot	42,429	79.03	60.09	25,093	26,017	1662
Leaf stem	44,242	79.35	59.25	26,305	26,545	1747
Young leaf	43,356	84.52	60.56	25,840	26,322	1669
Developed leaf	43,265	78.08	57.62	25,709	26,261	1706
Male flower	43,179	78.42	60.45	25,480	26,572	1744
Female flower	44,907	80.29	58.45	26,720	27,026	1829
2DAP fruit	45,239	80.06	60.57	26,786	26,795	1749
7DAP fruit	44,614	80.91	60.77	26,474	26,673	1721
10DAP fruit	44,833	81.44	61.29	26,799	26,736	1760
15DAP fruit	45,163	80.92	60.77	26,870	26,658	1744
20DAP fruit	44,420	81.24	61.08	26,511	26,556	1737
30DAP fruit	44,588	79.41	60.39	26,548	26,519	1734
Ripe fruit	43,859	79.52	59.24	26,079	26,391	1699
Seed	44,235	76.78	59.44	26,186	26,469	1708
Primary root	43,727	69.90	53.36	25,863	26,634	1738
Lateral root	43,704	65.70	50.31	25,855	26,582	1728

ISSN: 1471-2164