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Table 2 Mean and standard deviation (SD) of the running times in seconds and maximum memory consumption for each algorithm

From: Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data

Algorithm

Running time (s)

Max RSS (MB)

BIC-seq2

8389 ± 1222

3753 ± 0

Canvas

764 ± 9

10,933 ± 16

CNVnator

543 ± 2

7288 ± 1

FREEC

168 ± 2

1 ± 0

HMMcopy

69 ± 5

99 ± 0

QDNAseq

105 ± 1

287 ± 50

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BMC Genomics

ISSN: 1471-2164

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