Table 1 RNA-Seq data analysis mapping statistics on de novo assembly of unmapped reads
Sample | K-mer size | Unmapped reads (from reference assembly) | Transcripts assembled | ||||
|---|---|---|---|---|---|---|---|
Total | Paired | Number | Size | N50 | GC% | ||
Line 15 control | 59 | 5,271,989 | 3,317,100 | 3801 | 1,401,130 | 409 | 63.76 |
Line 6 control | 61 | 5,997,081 | 3,828,956 | 3454 | 1,334,830 | 433 | 64.51 |
Line 7 control | 59 | 5,307,856 | 3,334,102 | 3957 | 1,443,431 | 405 | 63.38 |
Line N control | 59 | 5,584,908 | 3,630,290 | 4077 | 1,520,131 | 413 | 63.65 |
Line O control | 57 | 5,681,771 | 3,543,282 | 3904 | 1,423,493 | 412 | 63.92 |
Line P control | 61 | 5,478,059 | 3,568,502 | 3323 | 1,253,231 | 423 | 63.96 |
Line 15 infec1 | 61 | 4,945,013 | 2,907,396 | 3181 | 1,171,966 | 406 | 64.22 |
Line 6 infec1 | 57 | 5,242,398 | 3,122,084 | 3830 | 1,394,985 | 409 | 63.59 |
Line 7 infec1 | 57 | 4,765,982 | 2,761,706 | 4285 | 1,534,811 | 400 | 64.16 |
Line N infec1 | 57 | 5,056,753 | 3,047,666 | 3538 | 1,244,627 | 382 | 63.98 |
Line O infec1 | 57 | 5,778,818 | 3,796,170 | 3800 | 1,410,323 | 424 | 64.36 |
Line P infec1 | 59 | 5,343,091 | 3,139,852 | 3608 | 1,329,105 | 407 | 64.38 |
Line 15 infec2 | 61 | 4,873,086 | 3,006,508 | 3659 | 1,404,734 | 441 | 63.34 |
Line 6 infec2 | 59 | 4,742,345 | 2,841,000 | 3940 | 1,476,426 | 430 | 63.65 |
Line 7 infec2 | 61 | 4,938,239 | 3,055,498 | 3583 | 1,382,526 | 445 | 63.51 |
Line N infec2 | 61 | 5,230,991 | 3,417,750 | 3412 | 1,336,894 | 454 | 62.99 |
Line O infec2 | 63 | 4,605,155 | 2,924,944 | 2911 | 1,116,056 | 423 | 63.89 |
Line P infec2 | 61 | 4,843,389 | 3,001,188 | 3525 | 1,364,545 | 432 | 62.79 |