Functional prediction of de novo uni-genes from chicken transcriptomic data following infectious bursal disease virus at 3-days post-infection

Table 11 Modules of downregulated uni-gene sequences produced by the WGCNA R tool. Only four unknown functions of downregulated uni-genes were subjected to WGCNA and they have clustered accordingly to the available colour-coded modules. The table provides information on possible functional annotation of the unknown upregulated sequences by comparing against sequences with known functional annotations

Sequence with No BLAST Hit	Module Colour	Sequence with BLAST Hit	Annotation
1_CL1576Contig1	Turquoise	1_CL1209Contig1	RNA-binding protein 38
		1_2708Contig1	cerebellar degeneration-related protein 2
		1_3404Contig1	e3 ubiquitin-protein ligase uhrf1
		1_404Contig1	DNA replication licensing factor mcm7
1_CL1679Contig3	Brown	lineN_ctrl_Lc_456_T_1/1_C_1.000_L_725	cell surface protein
1_CL2766Contig1	Brown	lineN_ctrl_Lc_456_T_1/1_C_1.000_L_725	cell surface protein
1_CL2484Contig1	Blue	1_CL1624Contig1	nicotinamide riboside kinase 2
1_CL2484Contig1	Blue	2_CL441Contig1	ubiquitin-conjugating enzyme e2c

ISSN: 1471-2164