Functional prediction of de novo uni-genes from chicken transcriptomic data following infectious bursal disease virus at 3-days post-infection

Table 4 Expression analysis of uni-transcripts in FPKM and its percentage respective to all transcriptome data obtained from Cufflink. Only uni-transcripts with FPKM cut-off value >1e-5 were reported in the table

Sample	Total number of uni-transcripts	Number of non-zero FPKM uni-transcripts	%	Number of uni-transcripts with FPKM > 1e-5	%
Line 15 control	10,828	8961	82.76	8961	82.76
Line 6 control	10,828	9108	84.12	9108	84.12
Line 7 control	10,828	9041	83.50	9041	83.50
Line N control	10,828	9090	83.95	9090	83.95
Line O control	10,828	8974	82.88	8974	82.88
Line P control	10,828	8866	81.88	8866	81.88
Line 15 infec1	10,828	8865	81.87	8865	81.87
Line 6 infec1	10,828	9028	83.38	9028	83.38
Line 7 infec1	10,828	9019	83.29	9019	83.29
Line N infec1	10,828	8856	81.79	8856	81.79
Line O infec1	10,828	8930	82.74	8930	82.74
Line P infec1	10,828	8804	81.31	8804	81.31
Line 15 infec2	10,828	9234	85.28	9234	85.28
Line 6 infec2	10,828	9241	85.34	9241	85.34
Line 7 infec2	10,828	9258	85.50	9258	85.50
Line N infec2	10,828	9246	85.39	9246	85.39
Line O infec2	10,828	9289	85.79	9289	85.79
Line P infec2	10,828	9145	84.46	9145	84.46

ISSN: 1471-2164