Table 2 Significant enrichment of biological processes in GO enrichment analysis
GO_ID | GO_Term | Total gene number | Expected DEG number | DEG number | |
|---|---|---|---|---|---|
305R | 372S | ||||
Root transcriptome of 305R | |||||
 GO:0008283 | Cell proliferation | 78 | 9.42 | 29 | 2 |
 GO:0042542 | Response to hydrogen peroxide | 82 | 9.91 | 19 | 6 |
 GO:0051567 | Histone H3-K9 methylation | 48 | 5.8 | 16 | 1 |
 GO:0019684 | Photosynthesis, light reaction | 269 | 32.5 | 9 | 2 |
 GO:0006334 | Nucleosome assembly | 43 | 5.2 | 20 | 2 |
 GO:0016572 | Histone phosphorylation | 17 | 2.05 | 8 | 0 |
 GO:0006270 | DNA replication initiation | 29 | 3.5 | 13 | 1 |
 GO:0043086 | Negative regulation of catalytic activity | 104 | 12.57 | 20 | 22 |
 GO:0006306 | DNA methylation | 60 | 7.25 | 17 | 2 |
 GO:0034976 | Response to endoplasmic reticulum stress | 81 | 9.79 | 20 | 7 |
 GO:0006346 | Methylation-dependent chromatin silencing | 23 | 2.78 | 6 | 1 |
 GO:0009644 | Response to high light intensity | 53 | 6.4 | 18 | 6 |
 GO:0022900 | Electron transport chain | 383 | 46.27 | 7 | 1 |
 GO:0042777 | Plasma membrane ATP synthesis coupled proton transport | 44 | 5.32 | 0 | 0 |
 GO:0009664 | Plant-type cell wall organization | 96 | 11.6 | 18 | 6 |
 GO:0031048 | Chromatin silencing by small RNA | 16 | 1.93 | 5 | 0 |
 GO:0009408 | Response to heat | 83 | 10.03 | 24 | 0 |
 GO:0045893 | Positive regulation of transcription, DNA-templated | 107 | 12.93 | 15 | 5 |
 GO:0043687 | Posttranslational protein modification | 28 | 3.38 | 2 | 1 |
Root transcriptome of 372S | |||||
 GO:0043086 | Negative regulation of catalytic activity | 104 | 6.36 | 20 | 22 |
 GO:0016099 | Monoterpenoid biosynthetic process | 11 | 0.67 | 0 | 1 |
 GO:0042777 | Plasma membrane ATP synthesis coupled proton transport | 44 | 2.69 | 0 | 0 |
 GO:0009411 | Response to UV | 63 | 3.85 | 10 | 4 |
 GO:0055114 | Oxidation-reduction process | 1865 | 114.1 | 206 | 146 |
 GO:0006355 | Regulation of transcription, DNA-templated | 647 | 39.58 | 95 | 55 |
 GO:0010035 | Response to inorganic substance | 338 | 20.68 | 59 | 41 |
 GO:0042542 | Response to hydrogen peroxide | 82 | 5.02 | 19 | 12 |
 GO:0009825 | Multidimensional cell growth | 40 | 2.45 | 10 | 2 |
 GO:0009908 | Flower development | 201 | 12.3 | 27 | 7 |
 GO:0043687 | Posttranslational protein modification | 28 | 1.71 | 2 | 1 |