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Table 2 Significant enrichment of biological processes in GO enrichment analysis

From: The dissection of R genes and locus Pc5.1 in Phytophthora capsici infection provides a novel view of disease resistance in peppers

GO_ID GO_Term Total gene number Expected DEG number DEG number
305R 372S
Root transcriptome of 305R
 GO:0008283 Cell proliferation 78 9.42 29 2
 GO:0042542 Response to hydrogen peroxide 82 9.91 19 6
 GO:0051567 Histone H3-K9 methylation 48 5.8 16 1
 GO:0019684 Photosynthesis, light reaction 269 32.5 9 2
 GO:0006334 Nucleosome assembly 43 5.2 20 2
 GO:0016572 Histone phosphorylation 17 2.05 8 0
 GO:0006270 DNA replication initiation 29 3.5 13 1
 GO:0043086 Negative regulation of catalytic activity 104 12.57 20 22
 GO:0006306 DNA methylation 60 7.25 17 2
 GO:0034976 Response to endoplasmic reticulum stress 81 9.79 20 7
 GO:0006346 Methylation-dependent chromatin silencing 23 2.78 6 1
 GO:0009644 Response to high light intensity 53 6.4 18 6
 GO:0022900 Electron transport chain 383 46.27 7 1
 GO:0042777 Plasma membrane ATP synthesis coupled proton transport 44 5.32 0 0
 GO:0009664 Plant-type cell wall organization 96 11.6 18 6
 GO:0031048 Chromatin silencing by small RNA 16 1.93 5 0
 GO:0009408 Response to heat 83 10.03 24 0
 GO:0045893 Positive regulation of transcription, DNA-templated 107 12.93 15 5
 GO:0043687 Posttranslational protein modification 28 3.38 2 1
Root transcriptome of 372S
 GO:0043086 Negative regulation of catalytic activity 104 6.36 20 22
 GO:0016099 Monoterpenoid biosynthetic process 11 0.67 0 1
 GO:0042777 Plasma membrane ATP synthesis coupled proton transport 44 2.69 0 0
 GO:0009411 Response to UV 63 3.85 10 4
 GO:0055114 Oxidation-reduction process 1865 114.1 206 146
 GO:0006355 Regulation of transcription, DNA-templated 647 39.58 95 55
 GO:0010035 Response to inorganic substance 338 20.68 59 41
 GO:0042542 Response to hydrogen peroxide 82 5.02 19 12
 GO:0009825 Multidimensional cell growth 40 2.45 10 2
 GO:0009908 Flower development 201 12.3 27 7
 GO:0043687 Posttranslational protein modification 28 1.71 2 1
  1. All the biological processes had a ks value < 0.001