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Fig. 5 | BMC Genomics

Fig. 5

From: Transcriptional dynamics of transposable elements when converting fibroblast cells of Macaca mulatta to neuroepithelial stem cells

Fig. 5

The enriched sequence motifs in the 60 LTRs activated at the early stages of reprogramming rhesus monkey fibroblast cells to NESCs. (A) The five motifs with the smallest E-values and their corresponding putative TFs. (B) The expression levels of the TFs in Part (A). Only those TFs with at least 5 FPKM in at least one of the 7 samples and standard deviation values of at least 5 FPKM were shown. (C) The distribution of motifs on some of the selected LTRs. M1 to M5 represents Motif 1 to Motif 5 in Part (A), respectively. (D) The bidirectional clustering of TEs and TFs in Part (B) based on the correlation coefficient values of their expression levels

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BMC Genomics

ISSN: 1471-2164

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