Table 2 Protein coding genes putatively regulated by TE associated siRNAs in their promoters in rice galls at 3 days post inoculation with M. graminicola. LFC log2 Fold Change, TE transposable element
From: Non-coding RNAs in the interaction between rice and Meloidogyne graminicola
Target | Description | LFC Target gene | siRNA | LFC siRNA |
|---|---|---|---|---|
Os03g0645100 | Similar to pyruvate dehydrogenase E1 component subunit beta | 0.27 | osa-b1.0r1–73,430 | − 2.14 |
Os04g0460300 | Amino acid transporter, transmembrane domain containing protein | 2.04 | osa-b1.0r1–86,468 | −1.90 |
Os06g0342100 | Signal recognition particle 19 kDa protein (SRP19) | 0.76 | osa-b1.0r1–108,253 | −1.59 |
Os07g0435400 | Similar to WD40 | 0.50 | osa-b1.0r1–120,740 | − 2.58 |
Os12g0227400 | Allyl alcohol dehydrogenase | 1.66 | osa-b1.0r1–41,090 | −1.48 |