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Table 1 Predicted binding sites for potential upstream regulators of the differentially expressed genes identified by RNA-seq. PWM ID indicates positional weight matrix ID of a predicted binding site and E-values refer to matching similarity between the predicted motif sequences and the PWM IDs. The count implies on number of genes containing the predicted motif sequence on their regulatory region

From: Transcriptomics unravels molecular players shaping dorsal lip hypertrophy in the vacuum cleaner cichlid, Gnathochromis permaxillaris

TF binding site

PWM ID

Count

Predicted motif sequence

E-value

HEB

M00698

97 / 106

CCTGCTG

1.119e-09

FOXP1

M00987

81 / 106

AAATAAANAACAAAAAAAAWA

4.441e-16

SMAD3

M00701

72 / 106

ACASASASACASACA

2.28E-07

HEB

M00698

41 / 106

KCCMRGCTGVCTGS

3.51E-07

FOXP1

M00987

31 / 106

TWTWYDTATWWRTWTATTTATWTATWWAT

1.05E-09

FOX

M00809

3.061E-08