Assembly | |
 Total number of sequences obtained | 164,737,322 |
 Number of sequences used for the assembly | 164,718,354 |
 Number of transcripts obtained post assembly | 110,992 |
 N50 value (in bp) | 1466 |
 Average contig length (in bp) | 864 |
 Putative gene number | 81,269 |
 Number of bases assembled | ~ 95 M |
Annotation | |
 Full length ORFs | 17,809 (16%) |
 Quasi full length ORFs | 14,017 (12.6%) |
 Transcripts with hits in the NCBI NR database (BLASTX) | 49,364 |
 Transcripts with hits in TAIR10 (BLASTX) | 45,377 |
 Transcripts with hits in Populus trichocarpa database | 46,795 |
 Transcripts with hits in the NCBI NR base (BLASTX) | 45,708 |
 Transcripts with PFAM domains | 64,186 |
 Transcripts classified in gene families | 48,322 |
 Transcripts with GO terms | 39,465 |
 Number of GO terms | 5701 |
 Number of KEGG pathways identified | 130 |
 Number of genes associated to KEGG pathways | 10,256 |