Fig. 5
From: Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes
Subnetworks resulting from network analysis. Subnetworks identified by PheNetic representing different pathways that were identified by mapping and connecting the genes of group A (restored genes), B (compensatory genes), and C (not restored genes) on the interaction network. Node color: dark green, dark red, and dark blue indicate the core genes of groups A, B, and C, respectively. Likewise, the light green, light red, and light blue correspond to the non-core genes in groups A, B and C, respectively. Connector genes that were not identified as differentially expressed, but identified by PheNetic on the paths that connect the differentially expressed genes are shown in gray. Edge color: regulatory edges are shown in green, metabolic edges in red and protein-protein edges are shown in blue color