Table 1 Significant SNP associations with vernalisation response in diverse B. oleracea accessions, detected across the genome (FDR < 0.05), including model information
Marker information | Association information | Model information | |||||||
|---|---|---|---|---|---|---|---|---|---|
Marker | Chromosome | Alleles | -Log10(p) | Marker R2 | Traits | Arabidopsis ID | Orthologue | Model | Population structure correction |
Bo6g103650.1:2010:T | C06 | C/T/Y | 6.4017787 | 0.39231 | 6P 12 V 10 °C DTB | AT1G67140.3 | SWEETIE | GLM | Q-Matrix |
Bo9g179000.1:2589:G | C09 | G/T/K | 6.4077566 | 0.39662 | 6P 12 V 10 °C DTB | AT5G04240.1 | ELF6 | GLM | Q-Matrix |
Bo1g011280.1:786:A | C01 | A/T/W | 6.0844894 | 0.44220 | 10P 12 V 5 °C DTF | AT4G31490.1 | Coatomer, beta subunit | GLM | Q-Matrix |
Bo7g026810.1:124:G | C07 | A/G/R | 4.7781947 | 0.36476 | 6P 12 V 10 °C DTF | AT2G05790.1 | O-Glycosyl hydrolases family 17 protein | GLM | PCA |
Bo7g104810.1:204:T | C07 | A/T/W | 5.9788107 | 0.41678 | 10P 6 V 15–5 °C DTB | AT3G55512 | mir172D | GLM | Q-Matrix |
Bo2g009460.1:894:T | C02 | C/T | 7.6880767 | 0.40565 | 10P 6 V 5 °C DTF - DTB | AT5G10140.4 | FLC.C2 | GLM | Q-Matrix |