Table 1 Existing ontological resources related to PPIO
Name | Domain |
|---|---|
Gene Ontology (GO) [8] | Biological process, Cellular component and Molecular function. |
Protein Ontology (PRO) [15] | Protein family, codeing gene, sequence and modification. |
Genetic Regulation Ontology (GRO) [16] | Gene regulatory processes modelling. |
Proteomics Standards Initiative – Molecular Interactions (PSI-MI) [4, 6] | Molecular interaction experiment annotation. |
Proteomics Standards Initiative – Protein Modification (PSI-MOD) [17] | Controlled vocabularies for representation of protein modification. |
INOH Ontology [18] | Biological event and biological pathway data annotation. |
WordNet [19] | On-line lexical reference system for English. |
BioPAX Ontology [20] | Biological pathway data exchange. |
Systems Biology Ontology (SBO) [21] | Biological system modelling. |