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Table 2 Summary of ARPEGGIO’s downstream analyses on the dataset from Edger and colleagues. The table is divided in two parts, one per progenitor. For each progenitor, the table shows the number of differentially methylated regions (DMRs) for each context, the number of genes overlapping with DMRs and the total number of genes found over all contexts

From: ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw

Methylation context Mimulus guttatus Mimulus luteus
CG CHG CHH CG CHG CHH
DMRs 65 126 23 277 211 58
Total DMRs 214 546
Genes overlapping DMRs 13 20 2 2 0 0
Total genes 35 2