Fig. 1
From: Comparative and functional genomics of the ABC transporter superfamily across arthropods
ABC_scan pipeline schematic. The ABC_scan pipeline can be separated into inputs (orange), actions (grey), and outputs (blue). Predicted protein sets for a given species are fed into the pipeline. In the first step the protein sets are searched with the ABC transporter (PF00005) HMM profile. Next, candidate transporters are sorted into families by blasting against a database of known ABC transporter proteins from H. sapiens, T. castaneum, D. melanogaster, and T. urticae. Lastly, results are filtered based on their amino acid length and annotated with corresponding metadata before outputting the predicted ABC set in tabular and fasta format