Genome-wide analysis and expression patterns of lipid phospholipid phospholipase gene family in Brassica napus L.

Table 1 The characteristics of 11 BnLPPs in Brassica napus L

Gene name	Gene ID	Genomic position (bp)	CDS length (bp)	Exon	Protein length (aa)	MW	pI	Predicted Pfam domain	Subcellular location
BnLPP1A	BnaA09g18500D	A09:11,485,093–11,486,357 -	984	2	327	36.9	8.35	PAP2	PM
BnLPP1B	BnaC09g20440D	C09:17,421,172–17,423,263 -	972	2	323	36.6	8.64	PAP2	PM
BnLPP1C	BnaA06g35100D	A06:23,178,693–23,179,882 +	951	2	316	35.5	7.20	PAP2	ER
BnLPP2A	BnaC08g39060D	C08:34,977,648–34,979,784 -	918	7	305	35.6	6.13	PAP2	PM
BnLPP2B	BnaA09g45250D	A09:30,966,399–30,968,509 -	939	7	312	35.2	6.18	PAP2	PM
BnLPP3A	BnaC05g48240D	C05:42,805,948–42,809,057 +	1089	8	362	40.5	6.13	PAP2	PM
BnLPP3B	BnaA05g33490D	A05:22,673,065–22,676,351 +	1089	8	362	40.4	6.23	PAP2	PM
BnLPP3C	BnaC03g33070D	C03:20,223,052–20,225,854 +	966	6	321	36.1	6.53	PAP2	PM
BnLPP3D	BnaA03g28040D	A03:13,723,633–13,726,024 +	966	6	321	36.1	6.56	PAP2	PM
BnLPP4A	BnaA05g21920D	A05:16,840,547–16,842,185 -	918	6	305	34.7	8.46	PAP2	PM
BnLPP4B	BnaC05g35130D	C05:34,426,978–34,428,721 -	918	6	305	34.7	8.46	PAP2	PM

In the genomic position, the positive (+) and negative (-) sign indicates the existence of gene on the positive and negative strand of that specific markers, respectively
CDS coding DNA sequences, bp base pair, MW molecular weight, pI isoelectric points, PM plasma membrane, ER endoplasmic reticulum

ISSN: 1471-2164