Species | Sample ID | Reads mapped (%) | Read depth | Quality filtered SNVs | TsTv ratio | Nucleotide diversity (Ï€) |
---|---|---|---|---|---|---|
Cheetah | CHEETAH_NAM1 | 97.74 | 5.56 | 27,854,391 | 1.82 | 0.00596 |
CHEETAH_NAM2 | 97.44 | 7.15 | 31,254,807 | 1.83 | 0.00804 | |
CHEETAH_NAM3 | 97.45 | 8.55 | 32,936,565 | 1.85 | 0.00940 | |
CHEETAH_TZA1 | 96.94 | 7.15 | 29,981,645 | 1.81 | 0.00765 | |
CHEETAH_TZA2 | 97.41 | 6.28 | 27,435,836 | 1.80 | 0.00637 | |
CHEETAH_TZA3 | 97.35 | 7.33 | 31,533,437 | 1.85 | 0.00801 | |
pool (N = 4) | 79.23 | 43.59 | 38,246,085 | 2.12 | 0.04701 | |
Sumatran tiger | SUM_IDN1 | 95.20 | 12.41 | 2,245,646 | 1.70 | 0.00243 |
SUM_IDN2 | 96.94 | 13.43 | 2,984,324 | 1.67 | 0.00237 | |
SUM_IDN3 | 93.87 | 11.75 | 2,213,024 | 1.79 | 0.00213 | |
SUM_IDN4 | 95.43 | 11.93 | 2,626,994 | 1.60 | 0.00243 | |
SUM_IDN5 | 94.98 | 12.51 | 2,442,662 | 1.78 | 0.00194 | |
SUM_USA1 | 94.47 | 11.46 | 2,205,499 | 1.73 | 0.00203 | |
SUM_USA2 | 96.58 | 12.42 | 2,361,962 | 1.68 | 0.00243 | |
pool (N = 4) | 88.84 | 25.78 | 18,859,425 | 2.10 | 0.00740 | |
Snow leopard | SNOW | 91.30 | 43.59 | 10,634,946 | 1.73 | 0.00246 |
pool (N = 4) | 95.58 | 50.14 | 9,340,412 | 1.83 | 0.00281 |