Exploiting genomic synteny in Felidae: cross-species genome alignments and SNV discovery can aid conservation management

Table 3 Summary of SNVs called and annotated for each species. Total number of samples corresponds to the number of individual WGS and individuals included in each pool (N=4). Fixed SNVs refers to variants calling the alternative allele across all samples in each species relative to the domestic cat

^aMAF thresholds were used to exclude SNV that did not appear in at least one individual in a homozygous state or at least two individuals in a heterozygous state
^bSNV annotated as ‘deleterious’ by VEP tool had a SIFT score 0-0.05

ISSN: 1471-2164