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Table 1 List of genome sequences used in this studya

From: Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae

Species

Reference collection/Isolate number

Assembly Size (Mbp)

Number of gene models

Genome accession number

Reference

Dothideomycetes

 Botryosphaeriales

  Botryosphaeria kuwatsukai

LW030101

47.39

11,278

MDSR01000000

[35, 51]

  Botryosphaeria dothidea

CMW8000

43.50

11,368

http://genome.jgi.doe.gov/Botdo1_1/Botdo1_1.home.html

[36]

  Diplodia corticola

CBS112549

34.99

9376

MNUE01000001

[30]

  Diplodia sapinea

CBS117911

36.05

9589

AXCF00000000

[52]

 

CBS138184

35.24

9386

JHUM00000000

[52]

  Diplodia scrobiculata

CBS139796

34.93

9204

LAEG00000000

[53]

  Diplodia seriata

UCDDS831

37.12

9759

MSZU00000000

[32]

 

F98.1

37.27

9832

LAQI00000000

[37]

  Eutiarosporella darliae

2G6

27.27

7904

GFXH01000000

[27]

  Eutiarosporella pseudodarliae

V4B6

26.74

7846

GFXI01000000

[27]

  Eutiarosporella tritici-australis

153

26.59

7783

GFXG01000000

[27]

  Lasiodiplodia gonubiensis

CBS115812

41.14

10,649

RHKH00000000

Present study

  Lasiodiplodia pseudotheobromae

CBS116459

43.01

10,964

RHKG00000000

Present study

  Lasiodiplodia theobromae

CBS164.96

42.97

10,961

RHKF00000000

Present study

 

CSS01

43.28

11,017

RHKB00000000

[49]

  Macrophomina phaseolina

MS6

48.88

10,799

AHHD00000000

[34]

  Neofusicoccum cordaticola

CBS123634

45.71

12,822

RHKC00000000

Present study

 

CBS123638

43.56

12,630

RHKD00000000

Present study

  Neofusicoccum kwambonambiense

CBS123639

44.17

12,839

RHKE00000000

Present study

 

CBS123642

44.21

12,904

RKSS00000000

Present study

  Neofusicoccum parvum

CMW9080

41.41

12,870

RHJX00000000

Present study

 

CBS123649

42.16

12,453

RHJY00000000

Present study

 

UCRNP2

42.52

12,691

AORE00000000

[33]

  Neofusicoccum ribis

CBS115475

43.18

12,708

RHJZ00000000

Present study

 

CBS121.26

43.12

12,733

RHKA00000000

Present study

  Neofusicoccum umdonicola

CBS123644

42.29

12,816

RHKB00000000

Present study

 Capnodiales

  Acidomyces richmondensis

meta

26.82

10,338

JOOL00000000

[54]

  Baudoinia panamericana

UAMH 10762

21.88

10,508

AEIF00000000

[4]

  Cercospora berteroae

CBS538.71

33.89

11,903

PNEN00000000

[55]

  Cercospora beticola

09–40

37.06

12,463

LKMD00000000

[55]

  Cercospora zeina

CMW25467

40.76

10,193

MVDW00000000

[56]

  Dothistroma septosporum

NZE10

30.21

12,415

AIEN00000000

[4]

  Pseudocercospora eumusae

CBS 114824

47.12

12,632

LFZN01000000

[57]

  Pseudocercospora fijiensis

CIRAD86

29.98

13,066

AIHZ00000000

[4]

  Pseudocercospora musae

CBS 116634

60.44

13,129

LFZO00000000

[57]

  Ramularia collo-cygni

URUG2

32.25

11,612

FJUY00000000

[58]

  Sphaerulina musiva

SO2202

29.35

10,233

AEFD00000000

[4]

  Zymoseptoria tritici

IPO323

39.69

10,963

ACPE00000000

[59]

 Dothideales

  Aureobasidium namibiae

CBS 147.97

25.43

10,259

AYEM00000000

[60]

  Aureobasidium subglaciale

EXF-2481

25.80

10,792

AYYB00000000

[60]

 Hysteriales

  Hysterium pulicare

CBS 123377

38.43

12,352

AJFK00000000

[4]

  Rhytidhysteron rufulum

CBS 306.38

40.18

12,117

AJFL00000000

[4]

 Myriangiales

  Elsinoe australis

NL1

23.34

9223

NHZQ00000000

[7]

 Mytilinidiales

  Lepidopterella palustris

CBS 459.81

45.67

13,861

LKAR00000000

[61]

 Pleosporales

  Alternaria alternata

SRC1lrK2f

32.99

13,466

LXPP00000000

[62]

  Ascochyta rabiei

ArDII

34.66

10,596

JYNV00000000

[63]

  Bipolaris maydis

ATCC 48331

32.93

12,705

AIHU00000000

[4]

  Bipolaris oryzae

ATCC 44560

31.36

12,002

AMCO00000000

[64]

  Bipolaris sorokiniana

ATCC 44560

34.41

12,214

AEIN00000000

[64]

  Bipolaris victoriae

FI3

32.83

12,882

AMCY00000000

[64]

  Bipolaris zeicola

26-R− 13

31.27

12,853

AMCN00000000

[64]

  Clohesyomyces aquaticus

CBS 115471

49.68

15,811

MCFA00000000

[65]

  Corynespora cassiicola

CCP

44.85

17,158

NSJI00000000

[66]

  Epicoccum nigrum

ICMP 19927

34.74

12,025

NCTX00000000

[67]

  Exserohilum turcicum

Et28A

43.01

11,698

AIHT00000000

[4]

  Leptosphaeria maculans

JN3

45.12

12,469

FP929064:FP929139

[12]

  Paraphaeosphaeria sporulosa

AP3s5-JAC2a

38.46

14,734

LXPO00000000

[62]

  Parastagonospora nodorum

SN15

37.21

15,994

AAGI00000000

[68]

  Periconia macrospinosa

DSE2036

54.99

18,735

PCYO00000000

[69]

  Pyrenophora tritici-repentis

Pt-1C-BFP

38.00

12,169

AAXI00000000

[70]

  Stemphylium lycopersici

CIDEFI 216

35.17

8997

LGLR00000000

[71]

 Venturiales

  Verruconis gallopava

CBS 43764

31.78

11,357

JYBX00000000

[72]

incertae sedis

  Cenococcum geophilum

1.58

177.56

14,709

LKKR00000000

[61]

  Coniosporium apollinis

CBS 100218

28.65

9308

AJKL00000000

[72]

  Glonium stellatum

CBS 207.34

40.52

14,277

LKAO00000000

[61]

Eurotiomycetes

 Eurotiales

  Aspergillus nidulans

FGSC A4

30.28

9556

AACD00000000

[73]

  1. aEntries in boldface represent genomes that were sequenced as part of the present study