Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae

Nagel, Jan H.; Wingfield, Michael J.; Slippers, Bernard

doi:10.1186/s12864-021-07902-w

Table 3 Genome and genome annotation completeness assesment^a

From: Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae

	Genome BUSCO %					Current annotation BUSCO %					Prior annotation BUSCO %
Genome	C	S	D	F	M	C	S	D	F	M	C	S	D	F	M
Botryosphaeria kuwatsukai LW030101	99.2	98.9	0.3	0.1	0.7	98.4	98.1	0.3	0.6	1.0
Botryosphaeria dothidea CMW8000	99.0	98.6	0.4	0.3	0.7	98.5	98.1	0.4	0.5	1.0	98.1	97.7	0.4	0.3	1.6
Diplodia corticola CBS112549	98.9	98.7	0.2	0.1	1.0	98.7	98.6	0.1	0.5	0.8	99.4	99.2	0.2	0.3	0.3
Diplodia sapinea CBS117911	98.0	97.8	0.2	0.5	1.5	97.6	97.5	0.1	0.9	1.5
Diplodia sapinea CBS138184	96.0	95.8	0.2	0.8	3.2	95.6	95.4	0.2	1.2	3.2
Diplodia scrobiculata CBS139796	95.4	95.2	0.2	2.3	2.3	95.0	94.8	0.2	1.8	3.2
Diplodia seriata UCDDS831	99.1	98.9	0.2	0.2	0.7	98.8	98.7	0.1	0.5	0.7	87	86.9	0.1	5.9	7.1
Diplodia seriata F98.1	99.3	98.9	0.4	0.1	0.6	98.9	98.5	0.4	0.5	0.6	90.1	89.9	0.2	2.6	7.3
Eutiarosporella darliae 2G6	98.1	97.8	0.3	0.6	1.3	98.5	97.8	0.7	0.5	1.0
Eutiarosporella pseudodarliae V4B6	98.2	98.0	0.2	0.6	1.2	98.1	97.8	0.3	0.7	1.2
Eutiarosporella tritici-australis 153	98.3	98.0	0.3	0.4	1.3	98.6	98.4	0.2	0.4	1.0
Lasiodiplodia gonubiensis CBS115812	97.2	97.1	0.1	0.2	2.6	98.3	98.2	0.1	0.8	0.9
Lasiodiplodia pseudotheobromae CBS116459	99.1	98.9	0.2	0.2	0.7	98.3	98.0	0.3	0.8	0.9
Lasiodiplodia theobromae CBS164.96	97.2	97.0	0.2	0.2	2.6	98.6	98.2	0.4	0.5	0.9
Lasiodiplodia theobromae CSS01	99.1	98.7	0.4	0.0	0.9	99.1	98.7	0.4	0.4	0.5
Macrophomina phaseolina MS6	98.9	98.7	0.2	0.0	1.1	98.1	97.9	0.2	0.8	1.1	91.2	91	0.2	4.5	4.3
Neofusicoccum cordaticola CBS123634	97.0	94.9	2.1	0.9	2.1	96.1	94.2	1.9	1.6	2.3
Neofusicoccum cordaticola CBS123638	98.5	98.0	0.5	0.5	1.0	98.3	97.9	0.4	0.6	1.1
Neofusicoccum kwambonambiense CBS123639	99.0	98.6	0.4	0.3	0.7	98.6	98.2	0.4	0.7	0.7
Neofusicoccum kwambonambiense CBS123642	98.9	98.4	0.5	0.4	0.7	98.8	98.3	0.5	0.5	0.7
Neofusicoccum parvum CMW9080	95.4	95.0	0.4	2.0	2.6	94.3	93.9	0.4	2.0	3.7
Neofusicoccum parvum CBS123649	95.1	94.5	0.6	0.9	4.0	96.4	95.9	0.5	1.3	2.3
Neofusicoccum parvum UCRNP2	98.1	97.9	0.2	0.5	1.4	97.8	97.6	0.2	0.9	1.3	84.9	84.8	0.1	6.6	8.5
Neofusicoccum ribis CBS115475	98.3	97.9	0.4	0.9	0.8	97.6	97.2	0.4	1.3	1.1
Neofusicoccum ribis CBS121.26	98.7	98.3	0.4	0.6	0.7	98.2	97.7	0.5	1.2	0.6
Neofusicoccum umdonicola CBS123644	98.7	98.2	0.5	0.5	0.8	98.1	97.5	0.6	1.1	0.8

^aBUSCO percentages for Complete (C), single (S), duplicated (D), fragmented (F) and missing (M) genes. Assesments were done using the Ascomycota ortholog library

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