Fig. 4

Comparison of ribosome-protected mRNA fragment (RPF) distribution along gene coding sequences in ‘Nipponbare’ (NB) and ‘Sea Rice 86’ (SR86). a The RPF distribution pattern derived from all genes in NB under normal (0 h, red line) and salt stress (24 h, blue line) conditions. b The coefficient of RPF depth of all detected genes between normal (0 h) and salt stress (24 h) conditions (grey line) is compared to the expectation of complete concordance between the two conditions (orange line) in NB. c The RPF distribution pattern derived from all genes in SR86 under normal (0 h, red line) and salt stress (24 h, blue line) conditions. d The coefficient of RPF depth of all detected genes between normal (0 h) and salt stress (24 h) conditions (grey line) is compared to the expectation of complete concordance between the two conditions (orange line) in SR86. In (a) and (c), higher Z scores indicate higher ribosome occupancy. The relative depth of RPFs is shown as the mean of three biological repeats