Table 1 Comparison of runtime from different basecallers (Guppy and Bonito) using the NB4 cell line. The AWS results were averaged over 4 runs. The local host results were averaged over 5 runs
From: A graphical, interactive and GPU-enabled workflow to process long-read sequencing data
Basecaller | cloud/local | average runtime (seconds) | standard error (seconds) |
|---|---|---|---|
Guppy CPU | AWS c5d18xlarge | 2551.8 | 22.4 |
Guppy GPU | AWS g4dn.4xlarge | 88.9 | 1.2 |
Guppy GPU | Laptop | 135.3 | 0.6 |
Bonito GPU | AWS g4dn.4xlarge | 948.2 | 1.7 |