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Table 1 Datasets and sources

From: Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets

sample ID organism common name tissue 10X version FACS sorted source reference ensembl reference version
dr-RGC-larva-s1 D. rerio zebrafish Retinal ganglion cells (RGCs) 2 yes GSE152842 Koelsch et al., 2020 101
dr-RGC-adult-s17 D. rerio zebrafish RGCs 2 yes GSE152842 Koelsch et al., 2020 101
dr-pineal-s1 D. rerio zebrafish pineal gland 2 no SRR8315377/SRR8315378 [7] 101
dr-pineal-s2 D. rerio zebrafish pineal gland 2 no SRR8315379/SRR8315380 [7] 101
nf-embryo-s1 N. furzeri killifish tail blastema 2 no SRR11886701 [8] 101
nf-embryo-s2 N. furzeri killifish tail blastema 2 no SRR11917464 [8] 101
am-hk-cave A. mexicanus mexican cavefish head kidney 3 yes GSE128306/L39134 [6] 100
am-hk-surf A. mexicanus mexican cavefish head kidney 3 yes GSE128306/L39132 [6] 100
dm-brain-s1 D. melanogaster drosophila brain 2 no SRR6327103 [2] 100
dm-brain-s2 D. melanogaster drosophila brain 2 no SRR6327104 [2] 100
ce-embryo-s1 C. elegans C. elegans embryo 2 no SRR8611991 [4] 100
ce-embryo-s2 C. elegans C. elegans embryo 2 no SRR8611992 [4] 100
ci-larva-s1 C. intestinalis ciona larva 2 no SRR9051005 [1] 100
ci-larva-s2 C. intestinalis ciona larva 2 no SRR9051006 [1] 100
hs-pbmc-4 k-v2 H. sapiens human pbmc 2 no * 10X Genomics 100
hs-pbmc-8 k-v2 H. sapiens human pbmc 2 no * 10X Genomics 100
mm-neuron-2 k-v2 M. musculus mouse neurons 2 no * 10X Genomics 100
mm-neuron-9 k-v2 M. musculus mouse neurons 2 no * 10X Genomics 100
hs-pbmc-10 k-v3 H. sapiens human pbmc 3 no * 10X Genomics 100
hs-pbmc-1 k-v3 H. sapiens human pbmc 3 no * 10X Genomics 100
mm-neuron-10 k-v3 M. musculus mouse neurons 3 no * 10X Genomics 100
mm-neuron-1 k-v3 M. musculus mouse neurons 3 no * 10X Genomics 100
       * https://support.10xgenomics.com/single-cell-gene-expression/datasets