Table 3 Benchmark for CPU runtimes of checkpoint detection step (in Minutes). 90-1 and 90-2 are two in silico data with around 90 single-cells, and 2000-1, 2000-2, 2000-3, 2000-4, and 2000-5 are five in silico data with approximate 2000 single cells
From: SCYN: single cell CNV profiling method using dynamic programming
Sample | Cell Number | SCYN | SCOPE | Fold change on time |
|---|---|---|---|---|
T10 | 99 | 2.917 | 46.995 | 16.111 |
T16M | 48 | 2.566 | 21.94 | 8.55 |
T16P | 52 | 2.786 | 23.927 | 8.588 |
90-1 | 93 | 2.73 | 44.14 | 16.168 |
90-2 | 92 | 2.769 | 40.415 | 14.596 |
10x-1% spike-in | 1056 | 3.598 | 485.768 | 135.011 |
10x-10% spike-in | 462 | 2.615 | 208.854 | 79.868 |
2000-1 | 2173 | 6.714 | 1147.658 | 170.935 |
2000-2 | 2214 | 7.602 | 1122.881 | 147.709 |
2000-3 | 1722 | 6.817 | 947.66 | 139.014 |
2000-4 | 1909 | 8.139 | 1122.335 | 137.896 |
2000-5 | 2048 | 7.128 | 1118.038 | 156.852 |