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Table 3 Benchmark for CPU runtimes of checkpoint detection step (in Minutes). 90-1 and 90-2 are two in silico data with around 90 single-cells, and 2000-1, 2000-2, 2000-3, 2000-4, and 2000-5 are five in silico data with approximate 2000 single cells

From: SCYN: single cell CNV profiling method using dynamic programming

Sample Cell Number SCYN SCOPE Fold change on time
T10 99 2.917 46.995 16.111
T16M 48 2.566 21.94 8.55
T16P 52 2.786 23.927 8.588
90-1 93 2.73 44.14 16.168
90-2 92 2.769 40.415 14.596
10x-1% spike-in 1056 3.598 485.768 135.011
10x-10% spike-in 462 2.615 208.854 79.868
2000-1 2173 6.714 1147.658 170.935
2000-2 2214 7.602 1122.881 147.709
2000-3 1722 6.817 947.66 139.014
2000-4 1909 8.139 1122.335 137.896
2000-5 2048 7.128 1118.038 156.852