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Table 2 Illumina HiSeq output statistics and mapping results with PacBio Iso-Seq isoforms

From: Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms

Samples

Clean Data (bp)

Q20/Q30 %

N percentage

Clean reads No.

Total mapped

B0605-1

6,984,550,054

97.62 %/94.09 %

0.0018

47,049,590

43,350,530 (92.14 %)

B0605-2

6,291,808,850

97.68 %/94.21 %

0.0010

42,361,288

39,222,916 (92.59 %)

C0542-1

6,329,620,030

97.64 %/94.12 %

0.0014

42,617,610

38,886,988 (91.25 %)

C0542-2

6,580,610,956

97.59 %/94 %

0.0013

44,244,718

41,382,118 (93.53 %)

  1. Q20/Q30 % represents the percentage of bases whose quality was larger than 20/30 in clean reads
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BMC Genomics

ISSN: 1471-2164

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