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Table 2 Illumina HiSeq output statistics and mapping results with PacBio Iso-Seq isoforms

From: Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms

Samples Clean Data (bp) Q20/Q30 % N percentage Clean reads No. Total mapped
B0605-1 6,984,550,054 97.62 %/94.09 % 0.0018 47,049,590 43,350,530 (92.14 %)
B0605-2 6,291,808,850 97.68 %/94.21 % 0.0010 42,361,288 39,222,916 (92.59 %)
C0542-1 6,329,620,030 97.64 %/94.12 % 0.0014 42,617,610 38,886,988 (91.25 %)
C0542-2 6,580,610,956 97.59 %/94 % 0.0013 44,244,718 41,382,118 (93.53 %)
  1. Q20/Q30 % represents the percentage of bases whose quality was larger than 20/30 in clean reads