Fig. 5

Transcription, small RNA abundance and methylation in embryogenic callus and leaf by TE family. Mean data is reported per TE family, which are represented by outer tick marks, grouped by superfamily and sorted in order of repeat abundance in the Vitis vinifera genome. Tracks, starting from the outside are: Vitis vinifera TE families, grouped by superfamily (ideograms); number of copies per genome (black histogram); normalised transcript abundance (red heat maps); normalised 21–22 nt siRNA abundance (outer brown heat maps); normalised 21–22 nt siRNA abundance (inner brown heat maps); mean CHH methylation, mean CHG methylation and mean CG methylation (yellow to blue heat maps, see scale in the centre)