Table 2 Nucleotide (amino acid) identity (%) between APV1-WNY and the new APV1 isolates
Isolates | Accession No | Full genome | ORF1a (PRO, MET, HEL) | ORF1b (RdRp) | ORF2 (P4) | ORF3 (HSP70) | ORF4 (P21) | ORF5 (P60) | ORF6 (CP) | ORF7 (CPm) | ORF8 (P26) | ORF9 (P18) | ORF10 (P19) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
APV1-HN | KR349464 | – | – | 87 (94) | 86 (78) | 96 (98) | 98 (98) | 97 (97) | 99 (99) | 97 (95) | 98 (99) | 98 (95) | – |
BTMT1 | MW316004 | 90 | 81 (82) | 87 (94) | 86 (75) | 96 (98) | 98 (98) | 98 (98) | 99 (99) | 97 (97) | 98 (99) | 98 (95) | 97 (97) |
BTY | MW316018 | 90 | 81 (82) | 87 (94) | 86 (75) | 96 (98) | 98 (98) | 98 (98) | 99 (99) | 97 (95) | 98 (99) | 98 (95) | 97 (97) |
BTZL1 | MW316019 | 90 | 81 (82) | 87 (94) | 86 (75) | 96 (98) | 98 (98) | 98 (98) | 99 (99) | 97 (95) | 98 (99) | 98 (95) | 97 (97) |
LDTT1 | MW316005 | 90 | 81 (82) | 87 (94) | 85 (75) | 96 (98) | 98 (98) | 97 (98) | 98 (99) | 97 (96) | 99 (99) | 97 (95) | 98 (97) |
LDTT2 | MW316006 | 90 | 81 (82) | 87 (94) | 85 (75) | 96 (98) | 98 (98) | 97 (98) | 98 (98) | 97 (96) | 99 (99) | 97 (95) | 98 (98) |
LSGP1–1 | MW316007 | 90 | 81 (82) | 87 (94) | 86 (75) | 96 (98) | 98 (98) | 98 (98) | 98 (99) | 97 (95) | 99 (100) | 99 (99) | 99 (99) |
LSGP1–2 | MW316020 | 94 | 91 (90) | 92 (98) | 86 (75) | 97 (98) | 98 (98) | 98 (98) | 99 (99) | 97 (95) | 97 (98) | 98 (95) | 99 (99) |
LSGP1–3 | MW316023 | 98 | 100 (99) | 92 (98) | 86 (75) | 97 (98) | 98 (98) | 98 (98) | 99 (99) | 97 (95) | 97 (99) | 98 (95) | 99 (99) |
LSGP2 | MW316008 | 90 | 81 (82) | 87 (94) | 84 (72) | 97 (99) | 98 (98) | 98 (98) | 98 (99) | 97 (96) | 99 (100) | 97 (95) | 98 (97) |
QHDH1 | MW316009 | 90 | 81 (82) | 87 (94) | 85 (75) | 96 (98) | 98 (98) | 98 (98) | 98 (98) | 97 (96) | 98 (100) | 98 (96) | 98 (97) |
QHDH4 | MW316010 | 90 | 81 (82) | 87 (94) | 85 (75) | 96 (98) | 98 (98) | 98 (98) | 99 (99) | 97 (96) | 98 (100) | 98 (96) | 98 (97) |
QHZY1 | MW316011 | 90 | 81 (82) | 87 (94) | 84 (72) | 96 (99) | 98 (98) | 97 (97) | 98 (99) | 97 (96) | 99 (100) | 97 (94) | 98 (97) |
QHZY2 | MW316012 | 90 | 81 (82) | 87 (94) | 85 (75) | 96 (99) | 98 (98) | 97 (97) | 98 (99) | 97 (96) | 99 (100) | 97 (94) | 98 (97) |
TCFM1 | MW316013 | 90 | 81 (82) | 87 (94) | 85 (75) | 96 (99) | 98 (99) | 98 (98) | 98 (99) | 98 (98) | 99 (100) | 99 (99) | 98 (96) |
WNCF1–1 | MW316014 | 90 | 81 (82) | 87 (94) | 84 (72) | 97 (99) | 98 (99) | 98 (98) | 99 (99) | 97 (96) | 99 (100) | 99 (99) | 99 (99) |
WNCF1–2 | MW316021 | 95 | 91 (90) | 92 (97) | 86 (72) | 99 (99) | 98 (100) | 99 (100) | 98 (99) | 98 (96) | 98 (99) | 99 (99) | 99 (99) |
WNCF1–3 | MW316024 | 98 | 99 (99) | 92 (97) | 86 (72) | 99 (99) | 99 (100) | 99 (100) | 98 (99) | 98 (96) | 99 (100) | 99 (99) | 99 (99) |
WNLG1 | MW316015 | 90 | 81 (82) | 87 (95) | 85 (75) | 96 (99) | 98 (98) | 97 (97) | 98 (98) | 97 (96) | 99 (100) | 98 (95) | 98 (97) |
WNSG1 | MW316016 | 90 | 81 (82) | 87 (94) | 85 (75) | 96 (99) | 98 (98) | 97 (97) | 98 (98) | 97 (96) | 99 (100) | 98 (95) | 98 (97) |
WNXL1–1 | MW316017 | 90 | 81 (82) | 87 (94) | 84 (72) | 97 (99) | 98 (98) | 98 (98) | 98 (99) | 97 (96) | 99 (100) | 98 (95) | 98 (98) |
WNXL1–2 | MW316022 | 98 | 99 (99) | 99 (100) | 88 (78) | 97 (99) | 98 (98) | 98 (98) | 98 (98) | 97 (96) | 99 (100) | 98 (95) | 98 (98) |