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Table 1 Categories of predicted differentially-expressed genes between allopatric and sympatric populations. Categories and genes involved in synaptic transmission for the anuran auditory pathway are summarized from [67, 68]. Gene and protein names indicate significant differentially-expressed transcripts between allopatric and sympatric populations for each gene/gene family after FDR correction (0.05)

From: Neurogenomic divergence during speciation by reinforcement of mating behaviors in chorus frogs (Pseudacris)

Categories of Predicted Proteins

Diff. Expr. Gene Name

Diff. Expr. Protein Name

1. Ionotropic receptors

 Glutamate receptor ionotropic, NMDA

–

–

 Glutamate receptor ionotropic, AMPA

–

–

 Gamma-aminobutyric acid receptor (GABA)

–

–

2. Synaptic vesicle proteins

 Neurotransmitter transporters

Slc6a12; BGT1

Sodium- and chloride-dependent betaine transporter /GABA transporter

 Neurotransmitter transporters

Slc6a13; GAT2

Sodium- and chloride-dependent GABA transporter 2

 Cysteine string protein (CSP)

–

–

 Cytochrome b561

–

–

 Rab and Ra1 proteins

–

–

 Rabphilin-3A

–

 

 Secretory carrier membrane proteins (SCAMPs)

SCAMP3

Secretory carrier-associated membrane protein 3

 Synaptic vesicle protein (SV2)

–

–

 Synapsins

–

–

 Synaptobrevins

–

–

 Synaptogyrin

–

–

 Synaptophysin

–

–

 Synaptotagmin

ESYT2-b

Extended synaptotagmin-2-B

 Transport proteins (channels) for chloride and zinca

SLC39A10

Zinc transporter ZIP10

 Vacuolar proton pump

–

–

3. Proteins that associate with synaptic vesicles

 Amphiphysin

–

–

 Endophilin

–

–

 AP2 and clathrin

–

–

 Ca2+, calmodulin-dependent protein kinases I and II (CaMKI and CaMKII)

–

–

 Dynamin-1

–

–

 Dynein

–

–

 Kinesins

KIFA3

Kinesin-associated protein 3

 Guanine nucleotide exchange factor MSS4

–

–

 Pp60src (tyrosine kinase that phosphorylates synaptophysin and synaptogyrin)

–

–

 Complexin/synaphin

  

4. Synaptic plasma membrane proteins

 Munc13s

–

–

 Neurexins

–

–

 SNAP-25

–

–

 Syntaxins

–

–

 Voltage-gated Ca2+ channels

–

–

 RIM

–

–

 Neuroligin

  

 Cadherin

CDH15; M-cadherin

Cadherin-15

5. Proteins that reversibly associate with plasma membrane proteins

 Munc18s/syntaxin binding protein

–

–

 N-ethylmaleimide-sensitive factor (NSF)

–

–

 α/β/γ SNAPs

–

–

  1. aMembers of the ZnT zinc transporter family are from Category 2, but those from the ZIP zinc transporter family, which occur in the plasma membrane instead, are from Category 4 [94]s