Table 3 Top 5 SNPs explaining the largest phenotypic variance for immune relevant traits identified by GWAS in Landrace

WBC

H3GA0014703

4

124.4

4.5

0.317

2.53E-05

B10

rs80835478

IV

EVI5

WBC

H3GA0014699

4

124.5

4.3

0.320

3.44E-05

B10

rs80930480

IV

EVI5

WBC

MARC0027349

12

21.7

4.3

0.150

3.48E-05

B5

rs81222578

IV

ENSSSCG00000043259

WBC

ALGA0077342

14

45.0

4.0

0.195

6.79E-05

rs80964268

IGV

WBC

ISU10000541

14

47.2

4.1

0.282

5.64E-05

rs80863047

3pUTR

LIF

NEU

ALGA0121271

12

19.4

4.0

0.355

1.65E-04

rs81328838

UGV

MEOX1

NEU

ALGA0113322

12

27.6

3.8

0.421

2.16E-04

rs81342064

IGV

NEU

ALGA0066053

12

33.0

3.8

0.377

2.45E-04

rs81433794

IGV

NEU

DRGA0011723

12

33.1

3.8

0.377

2.45E-04

rs81294298

IV

C17orf67

NEU

ASGA0102924

12

60.3

4.0

0.386

1.41E-04

rs81324324

IV

FAM83G, SLC5A10

MON

H3GA0034268

12

36.0

4.1

0.159

4.18E-05

B10

rs81434487

IV

VMP1

MON

ALGA0066234

12

36.0

3.9

0.162

5.33E-05

B10

rs81434489

IV

VMP1

MON

ASGA0054380

12

36.1

3.9

0.162

5.33E-05

B10

rs81434493

IV

TUBD1

MON

ALGA0067033

12

54.0

3.7

0.077

7.93E-05

rs81437196

IV

PIK3R5

HAP

ALGA0013060

2

37.2

4.5

0.061

8.70E-06

B5

rs81357336

IV

ANO5

HAP

DRGA0002935

2

37.2

4.5

0.061

8.72E-06

B5

rs81296277

IV

ANO5

HAP

ALGA0013078

2

37.8

4.5

0.061

8.70E-06

B5

rs81357366

IGV

HAP

ALGA0053703

9

69.8

4.7

0.470

6.25E-06

B5

rs81413020

IGV

HAP

ALGA0053704

9

69.9

5.0

0.450

2.84E-06

B5

rs81413026

IGV

HCT

ASGA0002880

1

53.5

5.2

0.261

2.41E-05

rs80853363

IGV

HCT

M1GA0000961

1

53.9

4.5

0.227

8.90E-05

rs80858850

UGV

TBX18

HCT

INRA0002424

1

54.0

5.1

0.266

3.28E-05

rs341132099

IGV

HCT

INRA0002425

1

54.0

4.5

0.227

8.90E-05

rs332231926

IGV

HCT

ALGA0003516

1

54.1

5.1

0.266

3.28E-05

rs80921572

IGV

MCHC

H3GA0016097

5

23.4

3.1

0.449

6.16E-05

rs80964787

IGV

MCHC

ALGA0032074

5

58.6

3.0

0.015

9.13E-05

rs80787531

IV

GRIN2B

MCHC

H3GA0016359

5

58.6

3.0

0.015

9.13E-05

rs80942872

IV

GRIN2B

MCHC

H3GA0016379

5

58.8

3.0

0.015

9.13E-05

rs80933182

IV

GRIN2B

MCHC

ALGA0032146

5

59.3

3.0

0.015

9.13E-05

rs81384359

IGV

IL-10

ALGA0094933

17

39.0

3.7

0.122

1.95E-05

B5

rs80997686

UGV

NFS1, ROMO1, RBM39

IL-10

ALGA0094942

17

39.2

3.7

0.122

1.95E-05

B5

rs81466504

IGV

IL-10

ASGA0076872

17

39.2

3.7

0.122

1.95E-05

B5

rs81466495

IGV

IL-10

ASGA0076896

17

39.4

3.7

0.122

1.95E-05

B5

rs80827927

IV

EPB41L1

IL-10

ASGA0076900

17

39.5

3.7

0.122

1.95E-05

B5

rs80842622

IV

EPB41L1

IL-1 β

ALGA0094933

17

39.0

2.9

0.122

1.63E-04

rs80997686

UGV

NFS1, ROMO1, RBM39

IL-1 β

ALGA0094942

17

39.2

2.9

0.122

1.63E-04

rs81466504

IGV

IL-1 β

ASGA0076872

17

39.2

2.9

0.122

1.63E-04

rs81466495

IGV

IL-1 β

ASGA0076896

17

39.4

2.9

0.122

1.63E-04

rs80827927

IV

EPB41L1

IL-1 β

ASGA0076900

17

39.5

2.9

0.122

1.63E-04

rs80842622

IV

EPB41L1

IL-4

ALGA0039474

7

22.1

4.0

0.303

6.04E-06

B5

rs81002011

IV

ZSCAN26, PGBD1

IL-4

ALGA0094933

17

39.0

2.8

0.122

1.61E-04

rs80997686

UGV

NFS1, ROMO1, RBM39

IL-4

ALGA0094942

17

39.2

2.8

0.122

1.61E-04

rs81466504

IGV

IL-4

ASGA0076872

17

39.2

2.8

0.122

1.61E-04

rs81466495

IGV

IL-4

ASGA0076896

17

39.4

2.8

0.122

1.61E-04

rs80827927

IV

EPB41L1

IL-8

ALGA0086892

15

116.1

5.1

0.494

2.86E-07 *

B5*

rs81454413

IV

SPAG16

IL-8

ASGA0070560

15

120.0

4.6

0.256

1.11E-06 *

B5*

rs81454672

IV

TNS1

IL-8

ASGA0070582

15

120.1

4.7

0.257

8.45E-07 *

B5*

rs81454730

IV

TNS1

IL-8

ASGA0070586

15

120.1

5.1

0.417

2.87E-07 *

B5*

rs80818610

IV

TNS1

IL-8

ALGA0087116

15

120.3

5.0

0.428

4.19E-07 *

B5*

rs80913177

IGV