Table 1 Sequence analysis of petunia COL proteins identified in Petunia axillaris genome
Gene name | Locus ID | ORF (bp) | Strand | No. of introns | Proteins | Â | Â | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Length (aa) | Domain Start-end (aa) | MW (kDa) | pI | GRAVY | Subcellular localization | ||||||
BBOX | CCT | Â | Â | ||||||||
PaCOL1 | Peaxi162Scf00007g01220 | 1224 | (+) | 03 | 407 | 2–47 | 351–394 | 44.08 | 5.74 | −0.400 | Nuclear |
PaCOL2 | Peaxi162Scf00012g03214 | 1302 | (−) | 03 | 434 | 2–47 | 392–422 | 48.32 | 5.99 | −0.568 | Nuclear |
PaCOL3 | Peaxi162Scf00015g00927 | 1224 | (+) | 01 | 407 | 17–61 | 350–392 | 46.41 | 4.97 | −0.777 | Nuclear |
PaCOL4 | Peaxi162Scf00020g01929 | 1149 | (+) | 02 | 382 | 52–99,12–56 | 313–355 | 42.83 | 5.69 | −0.790 | Nuclear |
PaCOL5 | Peaxi162Scf00045g01824 | 1011 | (+) | 01 | 336 | 43–90, 2–47 | 273–316 | 37.53 | 5.73 | −0.517 | Nuclear |
PaCOL6 | Peaxi162Scf00047g02226 | 1242 | (−) | 03 | 413 | 4–47, 47–77 | 356–399 | 45.32 | 5.42 | −0.629 | Nuclear |
PaCOL7 | Peaxi162Scf00067g01119 | 1152 | (−) | 03 | 383 | 18–59, 62–97 | 332–375 | 43.11 | 5.57 | −0.769 | Nuclear |
PaCOL8 | Peaxi162Scf00128g01749 | 1404 | (−) | 03 | 467 | 9–43, 56–99 | 419–462 | 51.39 | 6.24 | −0.719 | Nuclear |
PaCOL9 | Peaxi162Scf00359g00213 | 1239 | (−) | 03 | 412 | 5–47, 47–78 | 355–398 | 45.12 | 5.09 | −0.575 | Nuclear |
PaCOL10 | Peaxi162Scf00382g00067 | 1326 | (+) | 01 | 441 | 17–61 | 386–428 | 49.88 | 5.53 | −0.711 | Nuclear |
PaCOL11 | Peaxi162Scf00416g00214 | 1389 | (+) | 03 | 462 | 5–47, 43–72 | 406–449 | 51.08 | 5.58 | −0.468 | Nuclear |
PaCOL12 | Peaxi162Scf00459g00510 | 1071 | (−) | 01 | 356 | 51–98, 12–55 | 293–335 | 39.45 | 5.76 | −0.522 | Nuclear |
PaCOL13 | Peaxi162Scf00581g00039 | 1242 | (−) | 03 | 413 | 4–47, 44–90 | 359–399 | 45.34 | 5.91 | −0.616 | Nuclear |
PaCOL14 | Peaxi162Scf00942g00122 | 1140 | (+) | 01 | 379 | 58–105, 21–62 | 305–347 | 41.59 | 6.35 | −0.301 | Nuclear |
PaCOL15 | Peaxi162Scf01346g00018 | 1218 | (−) | 01 | 405 | 17–61 | 351–393 | 46.40 | 5.44 | −0.832 | Nuclear |