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Table 1 Genomic region and associated genes of the top 27 significant |iHS|

From: Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits

Chr Start (bp) End (bp) Mean |iHS| Value No. of SNP Candidate Genes
6 78,000,000 78,500,000 2.94 2
13 34,000,000 34,500,000 2.88 1 SVIL、ZNF438
2 92,500,000 93,000,000 2.68 18 AOX1、AOX2、AOX4、BZW1、CLK1、NIF3L1、ORC2、PPIL3、SGO2
13 40,000,000 40,500,000 2.67 9 KIZ
21 28,750,000 29,250,000 2.66 21 SNRPA1、TARS3、TM2D3
14 30,750,000 31,250,000 2.60 5 ARFGEF1、COPS5、CSPP1、PPP1R42、SGK3
24 20,000,000 20,500,000 2.55 27 CELF4
21 29,000,000 29,500,000 2.53 23 SNRPA1
2 134,250,000 134,750,000 2.37 1 CNR2、FUCA1、IFNLR1、IL22RA1、PNRC2、SRSF10
24 19,750,000 20,250,000 2.35 29 CELF4
5 79,000,000 79,500,000 2.29 89 RBFOX2、LOC515697
26 2,750,000 3,250,000 2.29 38
2 92,750,000 93,250,000 2.27 22 AOX2、AOX4、BZW1、CFLAR、CLK1、NDUFB3、NIF3L1、ORC2、PPIL3
16 39,250,000 39,750,000 2.24 13 EXOSC10、MASP2、SRM、TARDBP
22 11,000,000 11,500,000 2.24 9 CTDSPL、ITGA9、MIR2367、MIR26A-1、MIR26C、VILL
26 3,000,000 3,500,000 2.24 39
8 107,500,000 108,000,000 2.22 13 ALAD、BSPRY、C8H9orf43、CDC26、HDHD3、POLE3、PRPF4、RGS3、RNF183、SLC31A1、SLC31A2
1 113,500,000 114,000,000 2.20 23 GMPS、SLC33A1
23 28,000,000 28,500,000 2.18 8 MIR12033、OR12D2、UBD
1 147,000,000 147,500,000 2.15 34 CFAP410、TSPEAR、FAM207A、ITGB2、LRRC3、PFKL、PTTG1IP、UBE2G2、SUMO3、KRTAP10-2、KRTAP10-8、KRTAP12-2、LOC617218、LOC780781
8 66,500,000 67,000,000 2.14  9 ALG2、COL15A1、SEC61B、TGFBR1
27 1,000,000 1,500,000 2.10  16 CLN8、MYOM2、MIR10169
6 78,250,000 78,750,000 2.08  4
19 59,750,000 60,250,000 2.06  7 SLC39A11、SSTR2
14 58,500,000 59,000,000 2.03  1
23 19,000,000 19,500,000 2.02  16 SUPT3H
18 10,500,000 11,000,000 2.00  13 COX4I1、EMC8、IRF8