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Table 1 Genomic region and associated genes of the top 27 significant |iHS|

From: Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits

Chr

Start (bp)

End (bp)

Mean |iHS| Value

No. of SNP

Candidate Genes

6

78,000,000

78,500,000

2.94

2

13

34,000,000

34,500,000

2.88

1

SVIL、ZNF438

2

92,500,000

93,000,000

2.68

18

AOX1、AOX2、AOX4、BZW1、CLK1、NIF3L1、ORC2、PPIL3、SGO2

13

40,000,000

40,500,000

2.67

9

KIZ

21

28,750,000

29,250,000

2.66

21

SNRPA1、TARS3、TM2D3

14

30,750,000

31,250,000

2.60

5

ARFGEF1、COPS5、CSPP1、PPP1R42、SGK3

24

20,000,000

20,500,000

2.55

27

CELF4

21

29,000,000

29,500,000

2.53

23

SNRPA1

2

134,250,000

134,750,000

2.37

1

CNR2、FUCA1、IFNLR1、IL22RA1、PNRC2、SRSF10

24

19,750,000

20,250,000

2.35

29

CELF4

5

79,000,000

79,500,000

2.29

89

RBFOX2、LOC515697

26

2,750,000

3,250,000

2.29

38

2

92,750,000

93,250,000

2.27

22

AOX2、AOX4、BZW1、CFLAR、CLK1、NDUFB3、NIF3L1、ORC2、PPIL3

16

39,250,000

39,750,000

2.24

13

EXOSC10、MASP2、SRM、TARDBP

22

11,000,000

11,500,000

2.24

9

CTDSPL、ITGA9、MIR2367、MIR26A-1、MIR26C、VILL

26

3,000,000

3,500,000

2.24

39

8

107,500,000

108,000,000

2.22

13

ALAD、BSPRY、C8H9orf43、CDC26、HDHD3、POLE3、PRPF4、RGS3、RNF183、SLC31A1、SLC31A2

1

113,500,000

114,000,000

2.20

23

GMPS、SLC33A1

23

28,000,000

28,500,000

2.18

8

MIR12033、OR12D2、UBD

1

147,000,000

147,500,000

2.15

34

CFAP410、TSPEAR、FAM207A、ITGB2、LRRC3、PFKL、PTTG1IP、UBE2G2、SUMO3、KRTAP10-2、KRTAP10-8、KRTAP12-2、LOC617218、LOC780781

8

66,500,000

67,000,000

2.14

 9

ALG2、COL15A1、SEC61B、TGFBR1

27

1,000,000

1,500,000

2.10

 16

CLN8、MYOM2、MIR10169

6

78,250,000

78,750,000

2.08

 4

19

59,750,000

60,250,000

2.06

 7

SLC39A11、SSTR2

14

58,500,000

59,000,000

2.03

 1

23

19,000,000

19,500,000

2.02

 16

SUPT3H

18

10,500,000

11,000,000

2.00

 13

COX4I1、EMC8、IRF8