Table 4 Different structures of tRNAs and their minimum free energies
From: Evolution and structural variations in chloroplast tRNAs in gymnosperms
Type | Species | tRNA | Minimum free energy (kcal/mol) | Average (kcal/mol) |
|---|---|---|---|---|
Type 1 | S. eriopus | tRNAThr (GGU) | −16.0 | −12.6 |
T. baccata | tRNAMet (CAU) | −12.1 | ||
C. lanceolata | tRNAGly (UCC) | −9.6 | ||
N. longibracteata | tRNAAsn (GUU) | −12.8 | ||
Type 2 | T. fargesii | tRNAGly (UCC) | −19.5 | −19.3 |
S. sempervirens | tRNAGly (GCC) | −28.3 | ||
C. nootkatensis | tRNAPro (GGG) | −18.3 | ||
C. nootkatensis | tRNAIle (CAU) | −18.0 | ||
C. oliveri | tRNAMet (CAU) | −11.8 | ||
L. decidua | tRNAThr (GGU) | −16.3 | ||
P. armandii | tRNALys (UUU) | −20.6 | ||
P. sinensis | tRNALys (UUU) | −20.6 | ||
P. sinensis | tRNAThr (GGU) | −20.3 | ||
S. verticillata | tRNAGln (UUG) | −21.6 | ||
P. abies | tRNALys (UUU) | −20.6 | ||
P. sinensis | tRNAThr (GGU) | −20.3 | ||
T. flousiana | tRNAThr (GGU) | −15.1 | ||
Type 3 | A. dammara | tRNASer (GCU) | −36.8 | −32.8 |
A. dammara | tRNATyr (GUA) | −40.9 | ||
A. dammara | tRNASer (UGA) | −30.6 | ||
A. dammara | tRNASer (GGA) | −30.6 | ||
A. dammara | tRNALeu (UAA) | −30.2 | ||
A. dammara | tRNALeu (CAA) | −26.7 | ||
A. koreana | tRNASer (GCU) | −38.5 | ||
A. koreana | tRNASer (GCU) | −38.5 | ||
A. koreana | tRNASer (UGA) | −31.6 | ||
A. koreana | tRNALeu (CAA) | −26.4 | ||
A. koreana | tRNASer (GGA) | −35.3 | ||
A. koreana | tRNATyr (GUA) | −33.7 | ||
A. argotaenia | tRNASer (GCU) | −35.6 | ||
A. argotaenia | tRNATyr (GUA) | −33.6 | ||
A. argotaenia | tRNASer (UGA) | −32.3 | ||
A. argotaenia | tRNASer (GGA) | −32.2 | ||
A. argotaenia | tRNALeu (UAA) | −32.9 | ||
A. argotaenia | tRNALeu (CAA) | −26.5 | ||
A. heterophylla | tRNATyr (GUA) | −38.8 | ||
A. heterophylla | tRNALeu (CAA) | −24.9 | ||
Type 4 | P. sinensis | tRNATyr (GUA) | −32.1 | −28.3 |
P. sinensis | tRNASer (UGA) | −21.8 | ||
T. chinensis | tRNASer (UGA) | −32.5 | ||
G. biloba | tRNASer (UGA) | −26.6 | ||
Normal structure | T. flousiana | tRNALys (UUU) | −31.0 | −26.5 |
T. flousiana | tRNAGln (UUG) | −26.9 | ||
T. flousiana | tRNAGly (GCC) | −30.4 | ||
T. baccata | tRNALys (UUU) | −28.1 | ||
N. longibracteata | tRNAGlu (UUC) | −24.8 | ||
A. dammara | tRNAGln (UUG) | −25.8 | ||
A. dammara | tRNAGly (UCC) | −24.8 | ||
A. dammara | tRNACys (GCA) | −27.7 | ||
A. koreana | tRNAPro (UGG) | −25.0 | ||
A. koreana | tRNAIle (CAU) | −23.5 | ||
A. koreana | tRNAPhe (GAA) | −28.7 | ||
A. argotaenia | tRNAGly (UCC) | −24.8 | ||
A. argotaenia | tRNAArg (UCU) | −19.9 | ||
A. argotaenia | tRNAVal (UAC) | −30.0 | ||
A. argotaenia | tRNAHis (GUG) | −26.4 | ||
A. heterophylla | tRNACys (GCA) | −29.5 | ||
A. heterophylla | tRNATrp (CCA) | −23.0 | ||
C. deodara | tRNAGly (GCC) | −26.7 | ||
C. oliveri | tRNAPro (UGG) | −26.9 |