Table 1 Genome statistics for H. meleagridis virulent and attenuated strains
genomic feature | virulent strain | attenuated strain |
|---|---|---|
number of contigs | 187 | 281 |
Largest contig (bp) | 3,384,422 | 1,157,039 |
Total length (bp) | 43,414,808 | 43,133,364 |
N50 (bp) | 673,467 | 314,021 |
GC content | 28.66% | 28.77% |
Genes | 11,119 | 11,137 |
Transcripts | 11,119 | 11,137 |
Exons | 11,692 | 11,775 |
Introns | 573 | 638 |
Retroelements | 32 | 23 |
Retroelements (bp) | 5358 (0.01%) | 2568 (0.01%) |
DNA transposons | 226 | 235 |
DNA transposons (bp) | 96,463 (0.22%) | 100,787 (0.23%) |
Total interspersed repeats (bp) | 101,821(0.23%) | 103,355 bp (0.24%) |
Simple repeats | 14,135 | 13,433 |
Simple repeats (bp) | 761,166 (1.75%) | 704,125 (1.63%) |
Low complexity regions | 4320 | 4426 |
Low complexity regions (bp) | 220,103 (0.51%) | 228,092 (0.53%) |