Table 2 Summary of NoV assemblies in the approaches tested
From: Benchmarking different approaches for Norovirus genome assembly in metagenome samples
pA | pB | pC | pD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MEGAHIT | SPAdes | MEGAHIT | SPAdes | MEGAHIT | SPAdes | MEGAHIT | SPAdes | |||||||||
contig length | completeness | contig length | completeness | contig length | completeness | contig length | completeness | contig length | completeness | contig length | completeness | contig length | completeness | contig length | completeness | |
A | 7549 | 100 % | ^7550 K55 | 100 % | 7621 | 100 % | ^7548 K55-K77 | 100 % | 7547 | 100 % | ^7551 K55-K77 | 100 % | 7163* | 95.23 | ^7551 K55-K77 | 100 % |
B | 7823 | 100 % | 7284* | 96.52 % | 7625 | 100 % | 7549* K99 | 99.8 % | 7548* | 99.8 % | 7705 K99 | 100 % | 7588 | 100 % | ^7506 K77* | 99.26 % |
C | 7554 | 100 % | ^7553 K77 | 100 % | 7649 | 100 % | ^7561 K77 | 100 % | 7599 | 100 % | ^7561 K77 | 100 % | 7570* | 97.8 % | ^7560 K77 | 100 % |
D | 7728 | 100 % | 7092* | 93.96 % | 7420* | 98.6 % | 7094* | 93.99 % | 7625 | 100 % | 6898* | 91.39 % | 7594 | 100 % | 7598 K77-K99 | 100 % |
E | 7596 | 100 % | 7559 K99 | 100 % | 7625 | 100 % | 7502* K99 | 99.75 % | 7594 | 100 % | 7501* K99 | 99.74 % | 7589 | 100 % | 7556 K77 | 100 % |
F | 7684 | 100 % | 6732* | 89.31 % | 7733 | 100 % | 6732* | 89.31 % | 7705 | 100 % | 6732* | 89.31 % | 7620 | 100 % | ^7514 K77* | 99.34 % |
G | 7457* | 98.59 % | 7587 K99 | 100 % | 7227* | 95.75 % | 6216* | 82.47 % | 6871* | 91.16 % | 6222* | 82.55 % | 7674 | 100 % | 7605 K77-K99 | 100 % |
H | 7714 | 100 % | 7354* | 97.23 % | 7614 | 100 % | 7338* | 97.02 % | 7518* | 99.63 % | 7338* | 97.02 % | 7634 | 100 % | 7569 K99 | 100 % |