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Table 2 Summary of NoV assemblies in the approaches tested

From: Benchmarking different approaches for Norovirus genome assembly in metagenome samples

  pA pB pC pD
  MEGAHIT SPAdes MEGAHIT SPAdes MEGAHIT SPAdes MEGAHIT SPAdes
  contig length completeness contig length completeness contig length completeness contig length completeness contig length completeness contig length completeness contig length completeness contig length completeness
A 7549 100 % ^7550 K55 100 % 7621 100 % ^7548 K55-K77 100 % 7547 100 % ^7551 K55-K77 100 % 7163* 95.23 ^7551 K55-K77 100 %
B 7823 100 % 7284* 96.52 % 7625 100 % 7549* K99 99.8 % 7548* 99.8 % 7705 K99 100 % 7588 100 % ^7506 K77* 99.26 %
C 7554 100 % ^7553 K77 100 % 7649 100 % ^7561 K77 100 % 7599 100 % ^7561 K77 100 % 7570* 97.8 % ^7560 K77 100 %
D 7728 100 % 7092* 93.96 % 7420* 98.6 % 7094* 93.99 % 7625 100 % 6898* 91.39 % 7594 100 % 7598 K77-K99 100 %
E 7596 100 % 7559 K99 100 % 7625 100 % 7502* K99 99.75 % 7594 100 % 7501* K99 99.74 % 7589 100 % 7556 K77 100 %
F 7684 100 % 6732* 89.31 % 7733 100 % 6732* 89.31 % 7705 100 % 6732* 89.31 % 7620 100 % ^7514 K77* 99.34 %
G 7457* 98.59 % 7587 K99 100 % 7227* 95.75 % 6216* 82.47 % 6871* 91.16 % 6222* 82.55 % 7674 100 % 7605 K77-K99 100 %
H 7714 100 % 7354* 97.23 % 7614 100 % 7338* 97.02 % 7518* 99.63 % 7338* 97.02 % 7634 100 % 7569 K99 100 %
  1. * not complete. SPADes complete (or nearly complete) NoV genome contigs are shown with the kmer length that generated the contig. ^ contig lost in following kmer-length steps. pA, pB, pC and pD: pipelines A, B, C or D respectively. Genotypes are identical between pipelines, as indicated in Table 1