Table 2 Number of genes in highly informative Differential Expression Feature Extraction (DEFE) patterns M (ABA/MT, GA/MT, Fg/MT, Fg + ABA/MT, Fg + AS6/MT, Fg + GA/MT)
Pattern | Wheat genes | FHB related wheat genesa | Fg genes | Description |
|---|---|---|---|---|
M000001 | 289 | 41% | 1589 | up-regulated by Fg + GA, but not by them separately |
M000002 | 111 | 31% | 0 | down-regulated by Fg + GA, but not by them separately |
M000010 | 994 | 28% | 6 | up-regulated by Fg + AS6, but not by them separately |
M000020 | 248 | 37% | 0 | down-regulated by Fg + AS6, but not by them separately |
M000100 | 698 | 19% | 40 | up-regulated by Fg + ABA, but not by them separately |
M000200 | 960 | 21% | 0 | down-regulated by Fg + ABA, but not by them separately |
M001000 | 378 | 44% | 5 | up-regulated by Fg alone |
M002000 | 429 | 39% | 0 | down-regulated by Fg alone |
M010000 | 1306 | 4% | 0 | up-regulated by GA alone |
M020000 | 1163 | 3% | 0 | down-regulated by GA alone |
M100000 | 254 | 7% | 0 | up-regulated by ABA alone |
M200000 | 218 | 3% | 0 | down-regulated by ABA alone |
M001111 | 1593 | 97% | 1165 | up-regulated by Fg, with or without a hormone |
M002222 | 1181 | 94% | 0 | down-regulated by Fg, with or without a hormone |
M000111 | 309 | 77% | 72 | up-regulated by Fg in combination of any of the three hormones |
M000222 | 29 | 55% | 0 | down-regulated by Fg in combination of any of the three hormones |
M010001 | 10 | 0% | 0 | up-regulated by GA, with or without Fg |
M020002 | 10 | 0% | 0 | down-regulated by GA, with or without Fg |
M100100 | 9 | 0% | 0 | up-regulated by ABA, with or without Fg |
M200200 | 22 | 0% | 0 | down-regulated by ABA, with or without Fg |
M111111 | 750 | 42% | 0 | up-regulated by all treatments |
M222222 | 964 | 42% | 0 | down-regulated by all treatments |
M001100 | 1736 | 32% | 0 | up-regulated by Fg, but GA or AS6 neutralized/suppressed the effect of Fg |
M002200 | 543 | 38% | 0 | down-regulated by Fg, but GA and AS6 neutralized/suppressed the effect of Fg |
M000101 | 45 | 58% | 1315 | up-regulated by Fg in combination of either ABA or GA |
M000202 | 27 | 63% | 0 | down-regulated by Fg in combination of either ABA or GA |
M001101 | 552 | 81% | 647 | up-regulated by Fg with or without combination of either ABA or GA |
M002202 | 323 | 73% | 0 | down-regulated by Fg with or without combination of either ABA or GA |
M101111 | 378 | 70% | 0 | up-regulated by all treatment excepting GA alone |
M202222 | 1641 | 86% | 0 | down-regulated by all treatment excepting GA alone |