Table 5 Highly conserved AS events and the corresponding genes
From: Alternative splicing during fruit development among fleshy fruits
Type | Gene IDs | Gene description |
|---|---|---|
A3SS | CsaV3_6G042440, MELO3C007487.2, evm. TU.supercontig_196.5, Prupe.6G174000 | Transmembrane protein |
A3SS | CsaV3_1G038040, MELO3C015241.2, evm. TU.supercontig_48.51, Prupe.6G304400 | G patch domain-containing protein 8; D111/G-patch domain-containing protein |
ES | CsaV3_5G030480, MELO3C011886.2, evm. TU.supercontig_43.33, Prupe.1G232700 | cyclin-dependent kinase G-2-like isoform X1; Protein kinase superfamily protein |
A3SS | CsaV3_7G030160, MELO3C015907.2, evm. TU.supercontig_18.90, Prupe.3G007400 | ATP-dependent RNA helicase, putative; RNA helicase family protein |
IR | CsaV3_5G006510, MELO3C011709.2, evm. TU.supercontig_114.20, Prupe.2G224200 | Arginine/serine-rich splicing factor, putative; RSZ32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
A3SS | CsaV3_1G039610, MELO3C015383.2, evm. TU.contig_46341, Prupe.6G337000 | kinesin-like protein KIFC3; P-loop containing nucleoside triphosphate hydrolases superfamily protein |
IR | CsaV3_1G038040, MELO3C015241.2, evm. TU.supercontig_48.51, Prupe.6G304400 | G patch domain-containing protein 8; D111/G-patch domain-containing protein |
A3SS | CsaV3_4G009190, MELO3C022635.2, evm. TU.supercontig_14.172, Prupe.3G255200 | protein RIK isoform X2, RS2-interacting KH protein |
A3SS | CsaV3_7G031250, MELO3C023531.2, evm. TU.supercontig_234.14, Prupe.2G009600 | SURP and G-patch domain-containing protein 1-like protein; SWAP (Suppressor-of-White-APricot)/surp domain-containing protein/D111/G-patch domain-containing protein |
ES | CsaV3_6G047540, MELO3C007946.2, evm. TU.supercontig_6.317, Prupe.7G175500 | serine/arginine-rich splicing factor SR45a; RNA-binding (RRM/RBD/RNP motifs) family protein |
A3SS | CsaV3_5G004040, MELO3C005554.2, evm. TU.supercontig_1025.1, Prupe.5G073700 | Oxysterol-binding protein; OSBP (oxysterol binding protein)-related protein 2A |
A3SS | CsaV3_3G042630, MELO3C009973.2, evm. TU.supercontig_470.3, Prupe.3G287500 | ATP-dependent RNA helicase; DEAD box RNA helicase family protein |
ES | CsaV3_4G007970, MELO3C016139.2, evm. TU.contig_29215, Prupe.4G154700 | Mitogen-activated protein kinase; MAP kinase 19 |