Table 1 Sequencing data and error rates for isolate FSC237 to reference NC_006570.2, with a GC content of 32.26%
Platform | GC reads (%) | Mapped bases (bp) | Mismatches | Insertions | Deletions | Mismatch error rate (%) | Insertions error rate (%) | Deletions error rate (%) | Total error rate (%) | Even score | Total error rate added (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|
MiSeq | 36.29 | 265,564,803 | 710,772 | 653 | 8371 | 0.268 | 0.0002 | 0.0032 | 0.27 | 0.6715 | 0.2710 |
HiSeq | 32.12 | 7,402,011,869 | 22,972,180 | 43,344 | 56,564 | 0.310 | 0.0006 | 0.0008 | 0.31 | 0.9862 | 0.3117 |
Ion Torrent | 32.66 | 350,087,308 | 783,525 | 911,991 | 522,265 | 0.224 | 0.2605 | 0.1492 | 0.51 | 0.9400 | 0.6335 |
PacBio | 32.45 | 1,118,125,280 | 77,755,474 | 50,861,188 | 35,660,450 | 6.954 | 4.5488 | 3.1893 | 14.99 | 0.9747 | 14.6922 |
MinION | 32.26 | 533,513,044 | 68,465,798 | 13,287,287 | 18,136,808 | 12.833 | 2.4905 | 3.3995 | 16.88 | 0.9669 | 18.7230 |