Table 2 De novo classification of predicted Class I LTR retrotransposons into superfamilies based on homology to labeled sequences in Dfam and Repbase
Classification | C. dromedarius | C. bactrianus | C. ferus | V. pacos |
|---|---|---|---|---|
ERVL | 987 | 1139 | 1297 | 1316 |
ERVL-MaLR | 1503 | 1708 | 1881 | 2031 |
ERV1 | 1142 | 1160 | 1584 | 2455 |
ERV2 | 439 | 410 | 561 | 679 |
Gypsy | 32 | 15 | 42 | 56 |
Copia | 84 | 78 | 119 | 60 |
DIRS | 117 | 120 | 46 | 56 |
Ngaro | 15 | 14 | 45 | 25 |
Pao | 6 | 2 | 8 | 4 |
Unknown | 29 | 29 | 32 | 42 |
Undefined | 119 | 119 | 153 | 153 |
Total | 4,473 | 4,794 | 5,768 | 6,877 |