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Table 1 Represent the top 5 predicted motif based on rank in the Homer analysis, p-value, %targets, %background, and best match

From: Comparative methylation and RNA-seq expression analysis in CpG context to identify genes involved in Backfat vs. Liver diversification in Nanchukmacdon Pig

Rank

Motif

P-value

% of Targets

% of Background

STD(Bg STD)

Best Match

1

 

1e-50,917

97.64 %

73.36 %

46.2 bp (69.8 bp)

AT2G15740(C2H2)

2

 

1e-2855

13.01 %

8.33 %

56.2 bp (73.5 bp)

RFX7

3

 

1e-1958

10.57 %

7.01 %

55.8 bp (67.3 bp)

RAR:RXR(NR)

4

 

1e-1898

12.13 %

8.35 %

57.5 bp (73.1 bp)

RFX3

5

 

1e-1813

11.64 %

8.01 %

54.8 bp (69.2 bp)

MET28

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BMC Genomics

ISSN: 1471-2164

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