Table 7 KEGG pathway enrichment analysis of the DEGs between half nitrogen and full levels of nitrogen (P < 0.05)
From: Effects of nitrogen levels on gene expression and amino acid metabolism in Welsh onion
Pathway_ID | Pathway | Annotation | Gene ratio | Background ratio | P-value |
|---|---|---|---|---|---|
ko00270 | Cysteine and methionine metabolism | Amino acid metabolism | 3/662 | 22/5,901 | 0.0005864 |
ko00410 | Beta-alanine metabolism | Metabolism of other amino acids | 2/662 | 32/5,901 | 0.0012478 |
ko00330 | Arginine and proline metabolism | Amino acid metabolism | 2/662 | 42/5,901 | 0.0021466 |
ko00480 | Glutathione metabolism | Metabolism of other amino acids | 2/662 | 55/5,901 | 0.0036590 |
ko04913 | Ovarian steroidogenesis | Endocrine system | 1/662 | 3/5,901 | 0.0050761 |
ko03010 | Ribosome | Translation | 3/662 | 267/5,901 | 0.0086727 |
ko00140 | Steroid hormone biosynthesis | Lipid metabolism | 1/662 | 6/5,901 | 0.0101291 |
ko00830 | Retinol metabolism | Metabolism of cofactors and vitamins | 1/662 | 7/5,901 | 0.0118082 |
ko00380 | Tryptophan metabolism | Amino acid metabolism | 1/662 | 20/5,901 | 0.0334053 |
ko00980 | Metabolism of xenobiotics by cytochrome P450 | Xenobiotics biodegradation and metabolism | 1/662 | 21/5,901 | 0.0350490 |
ko04020 | Calcium signaling pathway | Signal transduction | 1/662 | 24/5,901 | 0.0399647 |
ko04022 | cGMP-PKG signaling pathway | Signal transduction | 1/662 | 30/5,901 | 0.0497285 |