Table 4 Pathway analysis of DMGs
From: Methylome and transcriptome analyses of soybean response to bean pyralid larvae
Sample | Site | Pathway | DMGs with Pathway Annotation | p-value | Pathway ID |
|---|---|---|---|---|---|
HRK0/HRK48 | CG | Fructose and mannose metabolism | 3 (1.99%) | 0.04756201 | ko00051 |
CHG | Terpenoid backbone biosynthesis | 6 (2.32%) | 0.003661496 | ko00900 | |
HSK0/HSK48 | CG | Basal transcription factors | 9 (1.34%) | 0.001368397 | ko03022 |
Fatty acid metabolism | 9 (1.34%) | 0.0047815 | ko01212 | ||
Fatty acid biosynthesis | 6 (0.89%) | 0.01282847 | ko00061 | ||
Propanoate metabolism | 6 (0.89%) | 0.01282847 | ko00061 | ||
Taurine and hypotaurine metabolism | 3 (0.45%) | 0.0241165 | ko00430 | ||
Thiamine metabolism | 4 (0.60%) | 0.02645737 | ko00730 | ||
Vitamin B6 metabolism | 5 (0.75%) | 0.04115753 | ko00750 | ||
Lysine degradation | 8 (1.19%) | 0.04184757 | ko00310 | ||
CHG | Thiamine metabolism | 5 (0.75%) | 0.005305703 | ko00730 | |
Non-homologous end-joining | 2 (0.30%) | 0.01649522 | ko03450 | ||
mRNA surveillance pathway | 23 (3.45%) | 0.03234759 | ko03015 | ||
HSK0/HRK0 | CG | Proteasome | 62 (0.90%) | 3.446782e-07 | ko03050 |
Porphyrin and chlorophyll metabolism | 39 (0.56%) | 0.0003851172 | ko00860 | ||
Arginine biosynthesis | 30 (0.43%) | 0.0005153445 | ko00220 | ||
Other types of O-glycan biosynthesis | 28 (0.40%) | 0.0005550764 | ko00514 | ||
Inositol phosphate metabolism | 67 (0.97%) | 0.001972833 | ko00562 | ||
Butanoate metabolism | 24 (0.35%) | 0.005140221 | ko03040 | ||
Spliceosome | 181 (2.61%) | 0.005140221 | ko03040 | ||
Purine metabolism | 76 (1.10%) | 0.006294239 | ko00230 | ||
Non-homologous end-joining | 6 (0.09%) | 0.009701395 | ko03450 | ||
Phosphatidylinositol signaling system | 62 (0.90%) | 0.01495655 | ko04070 | ||
2-Oxocarboxylic acid metabolism | 50 (0.72%) | 0.01933169 | ko01210 | ||
Fructose and mannose metabolism | 49 (0.71%) | 0.02097422 | ko00051 | ||
Fatty acid metabolism | 43 (0.62%) | 0.03164016 | ko01212 | ||
Propanoate metabolism | 24 (0.35%) | 0.03299536 | ko00640 | ||
Glycosphingolipid biosynthesis-lacto and neolacto series | 3 (0.04%) | 0.03962215 | ko00601 | ||
Lysine biosynthesis | 14 (0.20%) | 0.04167333 | ko00300 | ||
CHG | Arginine biosynthesis | 10 (0.52%) | 0.01543515 | ko00220 | |
Histidine metabolism | 7 (0.37%) | 0.02595471 | ko00340 | ||
Benzoxazinoid biosynthesis | 4 (0.21%) | 0.02953415 | ko00402 | ||
Oxidative phosphorylation | 25 (1.31%) | 0.04560989 | ko00190 | ||
Protein export | 11 (0.58%) | 0.04978774 | ko03060 | ||
HSK48/HRK48 | CG | Proteasome | 54 (0.79%) | 0.0001072989 | ko03050 |
Spliceosome | 189 (2.76%) | 0.0003355189 | ko03040 | ||
Other types of O-glycan biosynthesis | 28 (0.41%) | 0.0004669705 | ko00514 | ||
Butanoate metabolism | 25 (0.36%) | 0.001468033 | ko00650 | ||
Porphyrin and chlorophyll metabolism | 36 (0.53%) | 0.002476425 | ko00860 | ||
Arginine biosynthesis | 26 (0.38%) | 0.008701094 | ko00220 | ||
Non-homologous end-joining | 6 (0.09%) | 0.009208922 | ko03450 | ||
Inositol phosphate metabolism | 62 (0.90%) | 0.01307215 | ko00562 | ||
One carbon pool by folate | 16 (0.23%) | 0.01390304 | ko00670 | ||
Fatty acid metabolism | 44 (0.64%) | 0.01762924 | ko01212 | ||
2-Oxocarboxylic acid metabolism | 48 (0.70%) | 0.03560632 | ko01210 | ||
CHG | Phosphatidylinositol signaling system | 20 (1.03%) | 0.04792616 | ko04070 | |
Inositol phosphate metabolism | 20 (1.03%) | 0.04942088 | ko00562 |