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Table 1 Differentially expressed genes among genotypes, in the absence of aphid feeding near the Rag1 and Rag2 loci

From: Interaction between Rag genes results in a unique synergistic transcriptional response that enhances soybean resistance to soybean aphids

Locus

Gene ID

Comparison

Rag1

  

6 h

12 h

  

Rag1vSusc

Rag1/2vSusc

Rag1/2vRag2

Rag1vSusc

Rag1/2vSusc

Rag1/2vRag2

 

Glyma.07G064400

n.s.

1.25139

n.s.

0.90248

0.92288

n.s.

 

Glyma.07G063700*

2.48920

3.22033

3.37710

3.01142

3.13451

3.24709

 

Glyma.07G063600*

n.s.

-1.97796

-1.97610

-1.84461

-1.70881

-1.85213

 

Glyma.07G063300*

-0.92302

-1.40440

-1.28773

-1.29225

-1.14970

-1.24997

 

Glyma.07G063100*

n.s.

n.s.

n.s.

0.57516

0.68902

0.72726

 

Glyma.07G062400

n.s.

n.s.

n.s.

n.s.

n.s.

-0.62122

Rag2

  

6 h

12 h

  

Rag2vSusc

Rag1/2vSusc

Rag1/2vRag1

Rag2vSusc

Rag1/2vSusc

Rag1/2vRag1

 

Glyma.13G190900

-1.33233

-1.35883

-1.44740

-1.70851

-1.75952

-1.49086

 

Glyma.13G190800*

-1.85926

-1.95789

-1.81795

-1.84813

-1.62494

-1.57998

 

Glyma.13G190400*

-1.70636

-1.87610

-1.56779

-2.00623

-1.80790

-1.67855

  1. Comparisons between genotypes with or without a specific Rag gene were carried out, as indicated, and LogFC is presented for DE genes near the Rag1 or Rag2 loci. The genes underlined correspond to candidate Rag genes based on fine mapping [28, 31]. The gene in bold indicates a new candidate identified by our analysis. Genes with homology to NLRs are indicated by *. “n.s.” indicates that difference in expression for the gene was not statistically significant in the comparison