Comparative performance of the GenoLab M and NovaSeq 6000 sequencing platforms for transcriptome and LncRNA analysis

Table 3 Summary of InDel identifcation and effect type

Sample	Intergenic	Intron	Upstream	Downstream	CDS	Other	Total
Bean_mRNA_AB_N	117	2609	4131	3784	936	5914	17,491
Bean_mRNA_VZ_N	94	2363	3972	3406	889	5667	16,391
Bean_mRNA_YS_N	92	2116	3578	3096	727	5150	14,759
Bean_mRNA_AB_G	76	1887	3078	2770	663	4593	13,067
Bean_mRNA_VZ_G	102	2172	3656	3079	730	5162	14,901
Bean_mRNA_YS_G	57	1328	2370	2163	486	3878	10,282
Human_mRNA_AB_N	569	6704	1402	3529	112	5243	17,559
Human_mRNA_TG_N	598	6378	1597	3737	142	5592	18,044
Human_mRNA_VZ_N	607	5636	1376	3177	121	4882	15,799
Human_mRNA_YS_N	310	3578	1110	2628	73	4296	11,995
Human_mRNA_AB_G	334	3836	779	2336	71	3817	11,173
Human_mRNA_TG_G	248	2705	645	1973	78	3523	9172
Human_mRNA_VZ_G	459	4929	1125	2743	91	4217	13,564
Human_mRNA_YS_G	194	2062	605	1713	53	3099	7726
Mouse_mRNA_AB_N	480	2323	846	786	23	1866	6324
Mouse_mRNA_VZ_N	728	3194	1124	1012	35	2320	8413
Mouse_mRNA_YS_N	381	1444	640	581	18	1507	4571
Mouse_mRNA_AB_G	295	1385	519	532	16	1299	4046
Mouse_mRNA_VZ_G	415	1752	606	607	26	1544	4950
Mouse_mRNA_YS_G	119	533	257	278	7	694	1888

Note: CDS contains Start Lost, Frame Shift, Codon Deletion, Codon Insertion, Codon Change Plus Codon Deletion, Codon Change Plus Codon Insertion, and Stop Gained.AB_, VZ_, YS_,TG_ means library kits from four companies, N and G means Novaseq 6000 and GenoLab M

ISSN: 1471-2164