QTL and candidate gene identification of the node of the first fruiting branch (NFFB) by QTL-seq in upland cotton (Gossypium hirsutum L.)

Table 1 The statistics of quality and depth for sequencing results ^(a)

Sample	Clean Bases (bp)	Clean Reads	Clean Reads Rate (%)	Q₃₀ (%)	Mapped Reads	Mapping Rate (%)	Mean Depth (×)	Coverage Rate (%)
NFFB-H	61,468,488,900	409,789,926	98.69	92.58	405,495,223	99.18	25.61	83.19
NFFB-L	59,301,962,100	395,346,414	98.51	92.00	393,298,443	99.48	24.09	83.20
G2005	61,529,194,800	410,194,632	98.17	92.75	405,495,223	98.85	24.57	82.99
RIL182	61,496,797,800	409,978,652	98.21	92.61	407,011,110	99.28	24.89	83.04

^(a) Clean bases: the reliable data after filtering; Clean reads: the reliable reads after filtering; Q₃₀ (%): the percentage of the phred values greater than 30 bases in the overall base; Mapped reads: the number of reads aligned to the reference genome; Mean depth (×): the average depth of sequencing; Coverage rate (%): the proportion of regions detected at least once in the reference genome

ISSN: 1471-2164