From: Genomewide transcriptional response of Escherichia coli O157:H7 to norepinephrine
Upregulated pathwaysa | Downregulated pathwaysa | ||
---|---|---|---|
Pathwayb | Number of genes with increased expressionb | Pathwayb | Number of genes with decreased expressionb |
Amino acid ABC transport | 3 | 3’,5’-cyclic-AMP phosphodiesterase | 1 |
Amino acid transport | 2 | 30S ribosomal proteins | 11 |
23S and 16S rRNA methylation | 4 | 50S ribosomal proteins | 17 |
Anaerobic ribonucleotide reductase and dehydrogenase | 2 | 6-phosphofructokinase II | 1 |
Cell division/cell division inhibition | 4/1 | ABC transporter ATP-binding protein | 2 |
Cytochrome oxidase | 1 | ABC transporter permease | 2 |
Diguanylate cyclase/phosphoesterase | 1/1 | Acetate-CoA ligase | 1 |
DNA replication, modification and repair | 7 | Acetolactate synthase | 4 |
DUF domain containing proteins | 21 | Acetyl-CoA transferase/carboxylase | 1/3 |
Ferrous ion transport | 3 | Adenine uptake/utilization | 5 |
Glutamate metabolism | 5 | Alanine utilization | 4 |
Glutamine ABC transport | 3 | Alcohol/Aldehyde dehydrogenase | 1/1 |
Glycogen synthesis | 1 | Aldolase | 1 |
Hypothetical proteins | 87 | Aspartate metabolism | 6 |
Integrases/transposases | 8/12 | ATP F0F1 synthase subunit C | Â |
LPS biosynthesis | 4 | C4-dicarboxylate transporter | Â |
Multidrug ABC transport/efflux | 2/2 | Bifunctional aspartate kinase, cysteine desulfurase, glutamine synthase | 3 |
Multidrug transport | 6 | Enterobactin biosynthesis | 2 |
NAD(P)-dependent oxidoreductases | 3 | Cell division proteins | 8 |
Nitrate/nitrite transport | 3 | Citrate metabolism | 2 |
Nitrate/nitrite reductases | 2/2 | Cytochrome b | 2 |
Outer membrane proteins | 4 | Cytochrome c biogenesis protein | 2 |
Oxidoreductases | 6 | Cytochrome O ubiquinol oxidase | 4 |
Pyrimidine utilization proteins | 5 | Cytosine metabolism | 2 |
Sugar fermentation stimulation protein | 1 | Dipeptide ABC transport | 4 |
Sugar transporter | 1 | Electron transport complex subunit RsxD, E, and G | 3 |
Sulfate/sulfite transport metabolism | 9 | F0F1 ATP synthase | 7 |
Zn transport PTS fructose transporter | 2 1 | Fe2+ -enterobactin and Fe3+-hydroxamate ABC transport proteins | 2 |
 |  | Ferredoxin reductase | 2 |
 |  | Fe-S cluster assembly proteins | 6 |
 |  | Formate dehydrogenase | 5 |
 |  | Fructose biphosphate | 1 |
 |  | Galactose metabolism | 3 |
 |  | Glucan biosynthesis | 2 |
 |  | Glutathione metabolism | 6 |
 |  | Glycerol metabolism | 4 |
 |  | Glycine metabolism | 5 |
 |  | Heme/hemen transport and utilization | 4 |
 |  | Branched-chain amino acid transport | 2 |
 |  | Hypothetical proteins | 101 |
 |  | Iron ABC transporter | 1 |
 |  | Iron-enterobactin and iron-hydroxamate transport | 4 |
 |  | Isochorismate/isochorismate synthase EntC | 2 |
 |  | LPS biosynthesis | 3 |
 |  | Microcin transport | 3 |
 |  | Molybdate transport and molybdenum cofactor biosynthesis | 6 |
 |  | Multidrug transporter MdtBCDJ | 4 |
 |  | Multifunctional acyl-CoA and fatty acid oxidation complex | 3 |
 |  | Murein biosynthesis | 9 |
 |  | NAD(P)-dependent, NAD, NADH and NADHP- dependent enzymes | 14 |
 |  | Nitric oxide dioxygenase and reducatse | 2 |
 |  | Oxidative damage protection protein/defense proteins | 1/1 |
 |  | Peptide ABC transport | 2 |
 |  | Peptidylprolyl isomerases (proper protein -folding) | 5 |
 |  | Phage shock proteins (PspBDA) | 3 |
 |  | Phosphate transport | 6 |
 |  | Phosphoenolpyruvate--protein phosphotransferase | 2 |
 |  | phosphoethanolamine transferase | 1 |
 |  | phosphoribosylamine-glycine ligase and 5 other enzymes of purine biosynthesis | 6 |
 |  | Preprotein translocase subunits SecY, SecA, YajC, YidC | 4 |
 |  | Protein-export membrane protein SecD, SecF |  |
 |  | PTS glucose/sugar transporter | 1/1 |
 |  | Putrescine/Spermidine ABC transporters | 1/1 |
 |  | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | 1 |
 |  | Pyruvate Kinase | 2 |
 |  | Serine metabolism | 2 |
 |  | Spermidine/putrescine metabolism | 2 |
 |  | Succinate dehydrogenase | 7 |
 |  | Tellurite resistance proteins | 7 |
 |  | Thiamine ABC transport | 2 |
 |  | Threonine synthase | 1 |
 |  | Thymidylate synthase | 1 |
 |  | Transcriptional regulator FlhC | 1 |
 |  | Translation elongation factors G, Ts, Tu, Tu, IF-2, IF-3 | 6 |
 |  | Transposase | 2 |
 |  | tRNA modification enzyme complexes | 11 |
 |  | Tryptophanase | 1 |
 |  | Type II secretion system | 6 |
 |  | Tyrosine-protein kinase | 1 |
 |  | UDP-N-acetylglucosamine and UDP-N-acetylmuramate-amino acid ligases (cell wall biosynthesis) | 9 |
 |  | Urease accessory proteins and subunits α, β, γ | 7 |