Fig. 3

Fragments of putative conserved protein domains predicted in assembled contig of endogenous geminiviral element (EGE) (a) UZVR_3440 bp present in macadamia genome, and (b) genome map of a representative begomovirus, common bean severe mosaic virus (KX011475), with matching fragments of the EGE in macadamia. Sandy brown, limestone and light coral boxes indicate geminivirus Rep catalytic domain (AL1), Rep protein central domain (AL1_M) and C4 protein, respectively. The protein domains were predicted in different reading frames (RF). Compositionally biased regions of the RF (light blue bars) were not used in domain database search. Gene (green) and coding sequences (CDS, yellow) of the representative viral genome and the matching sequences of EGE (orange) are marked in the map